Detailed information on CNT30474747


BLAST search results

BLAST vs Swiss-Prot:
sp|P40621|HMGL_WHEAT, E-value = 6e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673601Saccharum spontaneumSetaria viridis7.8429.0892.6882reverse complement
CNT30398657Saccharum spontaneumTriticum turgidum4.8820.5694.1251reverse complement
CNT30140884Saccharum spontaneumLolium perenne9.4627.7387.8899reverse complement
CNT3015969Saccharum spontaneumZea mays9.4621.9585.8699forward
CNT30368472Saccharum spontaneumSorghum bicolor17.1141.9298.32179reverse complement
CNT30370564Saccharum spontaneumOryza glumipatula9.3720.2591.8498reverse complement

Expression of CNT30474747

Peptides detected in this lncRNA

>peptide 1 (49 aa)
PAASLASLPLSPPTPAAPAARQFALDSSPLRPAPRGSDRCAPCRRSNPP*

>peptide 2 (76 aa)
LQRPSPPFPFPLPPPQPRPPGNSPSIRPRFARPRADLTAALRVAAPIRHEGGQIQGRRQGRCQVRITKRISRFSFC*

>peptide 3 (37 aa)
SCSVPRLPSPFPSHPRSPGRQAIRPRFVPASPGPARI*

>peptide 4 (40 aa)
MMRMTTRVARRYADFFHVVLNARRWTMLCPTMELRQKAPW*

>peptide 5 (33 aa)
MPSKNNETNLAVFLLLMPSLSLSSARLVSAGWR*

Sequence

>CNT30474747
TCCTGCAGCGTCCCTCGCCTCCCTTCCCCTTTCCCCTCCCACCCCCGCAGCCCCGGCCGCCAGGCAATTCGCCCTCGATTCGTCCCCGCTTCGCCCGGCC
CCGCGCGGATCTGACCGCTGCGCTCCGTGTCGCCGCTCCAATCCGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGGCCGATGCCAAGTAAGAATA
ACGAAACGAATCTCGCGGTTTTCCTTTTGTTGATGCCCTCGCTGTCTCTGTCGTCGGCACGATTGGTTTCTGCAGGCTGGCGGTGAAGAGCAAGGGAGCG
GAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCAGCGCTTTCTTCGTATTCATGTGAGATGCGA
CTTTTTTTTATTCCCCCACTTTCCCTAAGAACAAGTCTGTTGCTGCGGTAAGTTCCGCCAACAAATCAACCAACCTACTACTCACCGAATCGGTAAGCTG
CTAAGCTTGCTCTTCACATTACACCCTCAAGCTAGAGTATAACAAGGCCATTGCTGCCTACAACAAGGGCGAGGTACAGAAACTTGCATACTTCAATTGC
TTTGTTAAGGAGGAAGAGGAGGAAGACGAAGAGGAGTCCGACAAGTCCAAGTCGGAGGTCAATGATGAGGATGACGACGAGGGTAGCGAGGAGGTATGCA
GATTTCTTTCATGTCGTCTTGAACGCGAGACGATGGACCATGCTTTGTCCAACAATGGAGCTGCGACAGAAGGCCCCGTGGTGAAAAACTATAAGGAGCC
TATATCCATGTACTAGAATTATTCAGTTTCACTTCACATCGTGATGTTTTTACTTTTGTCGTGCTATAACGGATAGCGCTCCTTGTTGGCGCCACCGGCG
GGTGTGTCTGCCGCTCCACACTGGCAGATTGCCTGCTTGTACCTAGATTACTGTTTCCATTGTCGTCATCGGCTAACATTTGTGATAATATCAGTTTGGG
TAATGTTAGATTAAGTAATCATTGTGTTCGATATCCTTGTGTTATA