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Detailed information on CNT30474628


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71V89|H33_GOSHI, E-value = 1e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521777Saccharum spontaneumSetaria italica17.3325.8197.09206forward
CNT30315797Saccharum spontaneumCorylus avellana23.3842.0682.37278forward
CNT30700039Saccharum spontaneumQuercus lobata23.1356.2482.91275forward
CNT30279437Saccharum spontaneumChenopodium quinoa24.1437.4779.44287forward
CNT3069242Saccharum spontaneumQuercus suber23.3851.8783.81278forward
CNT30200358Saccharum spontaneumPisum sativum19.637.4683.69233forward
CNT30709007Saccharum spontaneumGlycine max8.2441.1887.7698forward
CNT3048083Saccharum spontaneumPrunus dulcis23.3839.681.65278forward
CNT30177168Saccharum spontaneumSecale cereale24.8939.8489.86296forward
CNT30304662Saccharum spontaneumTriticum aestivum25.4858.8392.08303forward
CNT30220094Saccharum spontaneumHordeum vulgare24.8951.5789.19296forward
CNT30398097Saccharum spontaneumTriticum turgidum25.940.2689.94308forward
CNT30565750Saccharum spontaneumActinidia chinensis22.8824.7583.82272forward
CNT3084175Saccharum spontaneumVigna radiata23.1326.3978.91275forward
CNT30443502Saccharum spontaneumAegilops tauschii26.4950.8991.43315forward
CNT30255062Saccharum spontaneumAvena sativa25.965.6794.16308forward
CNT30655661Saccharum spontaneumTriticum dicoccoides24.8954.7189.19296forward
CNT30259840Saccharum spontaneumBrassica rapa10.8544.6487.6129forward
CNT30141675Saccharum spontaneumLolium perenne25.934.4996.1308forward
CNT30722562Saccharum spontaneumTriticum spelta25.956.8391.23308forward
CNT30368649Saccharum spontaneumSorghum bicolor12.4535.2491.22148forward
CNT30622400Saccharum spontaneumCajanus cajan23.1330.0589.09275forward
CNT30596421Saccharum spontaneumOryza meridionalis12.4521.0895.27148forward
CNT30148402Saccharum spontaneumBrachypodium distachyon14.0534.0194.61167forward
CNT30585391Saccharum spontaneumEchinochloa crusgalli25.4846.5491.09303forward
CNT3018856Saccharum spontaneumCyanidioschyzon merolae10.654.7884.13126forward

Expression of CNT30474628

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKRPTR*

Sequence

>CNT30474628
CCCAAATCCATCTACTTTCCCTTCGACCAAAATAGTAGTATAGGCCTCATCAAAGCGCCCAAAAACTGAAAGATACCCGCTGCCTGCCGATTTGAAAACC
GACCAAACAGGATTAGCGGTGTTGCACGTGCTTCCCGGTTGCCCCTTTGGACAAAATGCGAGCTATCCCAACCCCGAGTCACCAACACATTAGGACGGAC
GGTAAATTGCCCACCATACAGTAAATTGAAGGCAATACAGATCGTTTTCTTTACTAGTCGCCGGTCACCAAAAGCATAGGACAGCCATGACTACGCCCGT
GACACGGTAAAACCGCGGTTCCCCGTCCACAGATTCGGACGACCCACCACCACCAGTCCGCAACCACAATAAACCAACCGTGCCAACCACGGCACCACAT
CACAAATACAAATACAAACACAAACAGTATAAATAGCACAAATTATAATATAATTAACTAAGTCTTTTAACAGGATCGCTTCGGCACGAAGCGACCCAAA
CAAAGTAACAACAGCACATAATAAACTTGTAAAGCTGTTTTTACACTACTAACCAACTCAACCAACGACGCTAACACAGATTTTAGCCAACTAAGTTCTT
CATCAGATTCATCAGATCCACTAAACGCGGACGGAGATCAGCAAGCCGACGGTTCCAAATTGACCTCCCACGTGCCCACCTCCGCCGGGACGCAGGTGGT
TGCGACACGCTTACGCGCGCTCGCCGCGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTAGT
GTCCTCGAAGAGGCCCACGAGGTAGGCCTCGGCGGCCTCCTGGAGCGCCAGCACGGCGTGGCTCTGGAACCGGAGGTCCGTCTTGAAGTCCTGCGCGATC
TCGCGGACCAGGCGCTGGAAGGGCAGCTTCCGGATCAGCAGCTCCGTGCTCTTCTGGTACTTGCGGATCTCGCGCAGCGCCACCGTCCCGGGCCTGTACC
TGTGCGGCTTCTTCACGCCGCCCGAAAACGAACCTTGGTGGCGAGCTGCTTGCGGGGGGCCTTGCCTCCGGTGGACTTGCGGGCGGTCTGCTTCGTACGG
GCCATCTTCTCGGCGGGTTTCCTCTCCTCGGCGACTTGGCTTGCCTTGCCTGGACGGATCGAACTCAAAGGCGACGGAACTGGAGCGGG