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Detailed information on CNT30474278


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-155

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3044330Saccharum spontaneumPrunus dulcis72.2174.1683.9907forward
CNT30704857Saccharum spontaneumPrunus avium72.7757.8884.57914forward

Expression of CNT30474278

Peptides detected in this lncRNA

>peptide 1 (48 aa)
LFDTSMDKTFVINSSRPQTSPSAKTHISGQDGLQQLCTNPTLAQLTQR*

>peptide 2 (30 aa)
MVFPVRVLTKICMPPLSLSTRWRVDSFWML*

>peptide 3 (40 aa)
MVSDDSTSSVMVFPVRVFTKICIPPRRRSTKWRVDSFWIL*

>peptide 4 (44 aa)
SSTPAWIKHLSSIVQDLRHHHQPKHIYLAKMASNSCVRIQHLHS*

Sequence

>CNT30474278
CTCTTCGACACCAGCATGGATAAAACATTTGTCATCAATAGTTCAAGACCTCAGACATCACCATCAGCCAAAACACATATATCTGGCCAAGATGGCCTCC
AACAGTTGTGTACGAATCCAACACTTGCACAGTTAACACAAAGGTAAATTTGATAGCAGACAATCAGAGAGAAACAGCTAAGGCCAACCAAGTTAACTTG
CTGTTGCACATCAGCACAAGTTTGCAGGACTCGACATCACAGTAGAAACACACGGCATGGAAACACACACGGCAACCAAACAGTGCACACCACTGAGAGA
ACCACCCAGACGAACAACTTCGATTAATTACTGACCACCACCACCACGGAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCG
AGCGTGCGTCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCAA
TGGTGTCAGACGACTCGACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTTTTCACAAAGATTTGCATACCACCACGAAGGCGGAGCACCAAGTGGAGGGT
GGACTCTTTCTGGATATTGTAGTCGGCAAGAGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCCTCCTTG
TCTTGAATCTTCGCCTTCACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGCGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATCTGCATGCCTC
CCCTGAGGCGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCTAAGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATTAGCCG
CTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCGATCGTATCAGAGGACTCAACCTCAAGAGTGATGGTCTTCCCTGTG
AGGGTCTTGACAAAGATCTGCATGCCACCCCTAAGCCTGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTATAATCAGCGAGCGTCCGCCCATCCT
CAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATTGTATCTGAGGACTC
AACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATCTGCA