Detailed information on CNT30474047


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382729Saccharum spontaneumTriticum turgidum2521.2885.29136reverse complement
CNT30435125Saccharum spontaneumAegilops tauschii2516.6983.82136reverse complement
CNT30240279Saccharum spontaneumAvena sativa27.2112.1987.84148reverse complement
CNT30352118Saccharum spontaneumEragrostis tef25.3721.386.23138reverse complement
CNT30367860Saccharum spontaneumSorghum bicolor31.0713.9295.86169forward
CNT30604109Saccharum spontaneumOryza punctata27.2113.4780.41148forward

Expression of CNT30474047

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MADWLWAVDDADGWMAGGKKSKGACFFGTGWYIV*

>peptide 2 (35 aa)
DYMTCSRMDITVEWKLLVDQKMRNQCLACSAPPRT*

>peptide 3 (36 aa)
MKTRAMMAATSSPRRLNPASSSDSLLQHILPMPMDG*

>peptide 4 (45 aa)
MPGLLCSPKNLNLPCTAALKPVGWIQKHLRSSLAVSTGQARRREQ*

>peptide 5 (31 aa)
MDGWWKEEQRGLLLWYWLVYSIVLLCYDPWL*

Sequence

>CNT30474047
CGGATTACATGACTTGCAGTAGGATGGATATTACAGTTGAGTGGAAATTATTGGTGGATCAAAAGATGAGGAACCAATGCCTGGCCTGCTCTGCTCCCCC
AAGAACCTGAACCTCCCCTGCACGGCGGCACTGAAACCTGTTGGTTGGATTCAGAAGCACCTGCGATCCTCCCTGGCAGTGAGCACTGGGCAAGCTCGGA
GGCGTGAGCAGTGAGCAGTCAGCAGCACGGGTAGACGGCGACGCAGCGCCTCCTGGGCGGCGTGCAGAGAAGGATGAAGACGAGGGCGATGATGGCGGCG
ACCAGCAGCCCCAGGAGGTTGAACCCGGCCTCCTCCTCCGATTCGTTGCTGCAGCACATCTTGCCCATGCCGATGGATGGCTGATTGGCTGTGGGCTGTG
GACGATGCCGATGGATGGATGGCTGGTGGAAAGAAGAGCAAAGGGGCTTGCTTCTTTGGTACTGGCTGGTATATAGTATAGTGCTCCTGTGTTATGATCC
TTGGCTTTGAAGGCATTGCAGGGTAGGCAGTGGTTGGGGCATCG