Detailed information on CNT3047375


BLAST search results

BLAST vs Swiss-Prot:
sp|Q332V1|PSBB_LACSA, E-value = 4e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406228Prunus dulcisBeta vulgaris21.0423.7292.3165forward
CNT30200101Prunus dulcisPisum sativum98.3819.6691.78304forward
CNT30283847Prunus dulcisTriticum aestivum95.7921.6788.85296forward
CNT30414626Prunus dulcisPapaver somniferum81.5557.2793.65252forward
CNT3021701Prunus dulcisPopulus trichocarpa27.836.5593.0286forward
CNT3039143Prunus dulcisCucumis melo89.3224.8294.93276forward
CNT30174619Prunus dulcisVigna angularis35.284.3597.25109forward

Expression of CNT3047375

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MPDSCQKAQARKHNMCSGHTFVTPNTWIRYSTPCDTPTAP*

>peptide 2 (30 aa)
MKGITNIPCLHIGSRTGSEGSKTANSYRAIE

>peptide 3 (44 aa)
LGKSKEGFPVRSSVNISRSQYTQCQIAAKKHKPENTICAPATPS*

Sequence

>CNT3047375
TCTTAGGCAAATCCAAAGAGGGTTTTCCTGTACGTTCATCAGTAAATATTTCTAGATCCCAATACACCCAATGCCAGATAGCTGCCAAAAAGCACAAGCC
AGAAAACACAATATGTGCTCCGGCCACACCTTCGTAACTCCAAATACCTGGATTCGTTACAGTACCCCCTGTGATACTCCAACCGCCCCATGAATTGGTT
ATTCCTAAACGAGTCATGAAAGGTATAACGAACATACCCTGTCTCCACATTGGATCAAGAACAGGATCAGAAGGATCAAAAACTGCTAATTCGTATAGAG
CCATCGAAC