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Detailed information on CNT30473739


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 2e-130

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30251666Saccharum spontaneumAvena sativa79.9258.9291.68601forward
CNT30108136Saccharum spontaneumOryza longistaminata47.3444.4492.98356forward
CNT30603498Saccharum spontaneumOryza punctata72.3459.1388.6544forward

Expression of CNT30473739

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWITSSSRFLANVSGSADSPAVSQP*

>peptide 2 (46 aa)
MAWTKNPNMENMARRPFLSSFTLSSAKASGSSARMLCAWIRLGLPR*

Sequence

>CNT30473739
AAAAAGGGAAAAAAATGAGTCGTATTGGACGCGGCGCGAGATAATGATTAATGAACACAATTATTCCTTCTTGATTGAACCCTGGTAATTTACATCATGG
TACAAACTGAAACCAGTGCGCGCTCAGGTGCATCCGGACACCTCCTTCACTTGCCGGGCACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACGGG
GTCGGCGAGGTGGTCGGCAAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTC
TTGAGCTCCTTCACCTTGAGCTCGGCGAAGGCCTCGGGGTCGTCGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCCAGGTAGTCAAGCCCGC
CCTCGCTGAAGATCTGCGAACCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAACACGCAGCCGAGCGCGCC
CAGCATGGCCCAGCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCGGGGTCCGCGGACAGCCCGGCCGTGTCCCAGCCGTAGTCGCCG
GGGAACTCGCCCGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCCAGGTAGAGCACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCGCCG
GCTTGGCCTTCGCCGCCGTCTTGCGCATCGTCACGCGGGCCTCGCCGAACAG