CANTATAdb - search

Detailed information on CNT3047368

BLAST search results

BLAST vs Swiss-Prot:
sp|A0ZZ45|PSAI_GOSBA, E-value = 2e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690840	Prunus dulcis	Oryza sativa	21.71	3.46	82.5	160	forward
CNT30616037	Prunus dulcis	Sesamum indicum	24.42	8.12	87.22	180	forward
CNT3021444	Prunus dulcis	Citrullus lanatus	16.55	29.26	86.89	122	forward
CNT3018021	Prunus dulcis	Zea mays	21.71	4.12	82.5	160	forward
CNT30610498	Prunus dulcis	Gossypium raimondii	18.05	21.59	86.47	133	reverse complement
CNT30227829	Prunus dulcis	Ananas comosus	16.42	25.74	90.91	121	forward
CNT30354656	Prunus dulcis	Lactuca sativa	45.59	11.76	83.04	336	forward
CNT30152456	Prunus dulcis	Prunus persica	17.37	26.61	100	128	reverse complement
CNT3058960	Prunus dulcis	Amborella trichopoda	21.71	7.85	89.38	160	forward
CNT30323690	Prunus dulcis	Asparagus officinalis	28.9	8.35	84.51	213	forward
CNT30149719	Prunus dulcis	Brachypodium distachyon	8.82	28.51	93.85	65	forward
CNT30726954	Prunus dulcis	Lupinus angustifolius	21.57	5.99	92.45	159	forward

Expression of CNT3047368

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MIQVSLEKKKKRFVLIVSKKSCFFEHKEIKKPLQLPEILSPLKAQKLRGSC*

Sequence

>CNT3047368
AAAAATTATTTGCTGAGAAGGAAATAAAGATATAAAATTCCTACCAAAATAACTGGACGTTCCAACCAATAAAAACCCTAATGAACCTAAAAAAAGAATA
AAGGCCAAGCAGAAATTACTTGTTTTTCGAGACCCTGCTATAAGTTCTATCCATATACGTTCTGATCTCCGACTCATACTATAACTAGACCTAGTTGCAT
TTTATTGGAATTGGGAGAATAACAAAAATAAATTTTATTTTACTTTTTTTGTTTCCGAAGTAACTCGCATCAACCAGCACTATTATGATGTGAACGTTTA
GGGGTAATTCATCGAATTTCTTAGATCCAAACTAAAATAGTAACATCCCTTTCACATGATTTCCGAATACATATAGATATATTGACTTTACATTTAAGAA
ATTCCCCCCGATCCCGATCTATTTGAAAATAGTTATAATTCATTTACCCATAATATCATGTTTATACATAAGAGCTTATGCCCGAAGGAAGCCACATGTT
ATACCATATTCTACTAAATAGATATCCGTGTTATGATCCAAGTAAGTCTTGAAAAAAAAAAAAAAAGATTCGTCCTTATTGTATCTAAAAAATCTTGTTT
TTTTGAACATAAAGAGATAAAGAAGCCATTGCAATTGCCGGAAATACTAAGCCCACTAAAGGCACAAAAATTGAGGGGAAGCTGTTGAGAGTTATCATAG
AATGGGTACCTCGATTTAATATTTGTACCTGTTATTT