Detailed information on CNT3047350


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF4|TBB9_GOSHI, E-value = 1e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675325Prunus dulcisSetaria viridis59.6523.4584.56136forward
CNT30522590Prunus dulcisSetaria italica39.475.3887.7890forward
CNT30727960Prunus dulcisCorchorus capsularis68.8631.3486.62157forward
CNT30488155Prunus dulcisOlea europaea24.5613.7392.8656forward
CNT30397469Prunus dulcisTriticum turgidum31.146.0191.5571forward
CNT30586725Prunus dulcisMusa acuminata25.888.5588.1459forward
CNT3041960Prunus dulcisChlamydomonas reinhardtii42.9828.7487.7698forward
CNT30213619Prunus dulcisHelianthus annuus31.5822.7193.0672forward
CNT30627268Prunus dulcisDaucus carota46.058.4888.57105forward
CNT30363168Prunus dulcisSorghum bicolor59.6513.7983.09136forward
CNT30621647Prunus dulcisCajanus cajan42.1141.5685.4296forward
CNT30426941Prunus dulcisPapaver somniferum29.8211.8188.2468forward
CNT30573622Prunus dulcisVitis vinifera40.7934.1989.2593forward

Expression of CNT3047350

Peptides detected in this lncRNA

>peptide 1 (54 aa)
VVYVDSLKLKLRVAMVAPGGVYAVLGADHLPELGSDLVTALASLDMKNLTHFRF*

Sequence

>CNT3047350
TGTAGTATACGTTGACTCGCTCAAGCTGAAGCTCAGAGTCGCCATGGTAGCGCCCGGTGGAGTCTATGCCGTGCTCGGCGCAGACCACCTCCCAGAACTT
GGCTCCGATCTGGTTACCGCATTGGCCTCCCTGGATATGAAGAATCTCACGCATTTTCGGTTCTAGGGTTTTGCTGCAGAGAGAGAAAGATCGAGATCGA
GAGGAGAGAGAGAGAGAGAGAGAGAGAA