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Detailed information on CNT30473406


BLAST search results

BLAST vs Swiss-Prot:
sp|A7QEU4|PER5_VITVI, E-value = 6e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523062Saccharum spontaneumSetaria italica9.9926.3988100forward
CNT30604472Saccharum spontaneumOryza punctata20.4814.4681.46205forward

Expression of CNT30473406

Peptides detected in this lncRNA

>peptide 1 (29 aa)
FDFTDSKRKQSHDNYDVLTCGTYKQIIIS*

>peptide 2 (44 aa)
MALANLTCHAFSTAALKWTIPAVQGFSSSVLSEMNKTLCASTFL*

>peptide 3 (55 aa)
MVCAPESVTMSSALRPLRLKLSMSSATSSVGAGTLLLSTSSSLDTRPSRRPEGTL*

>peptide 4 (91 aa)
MMSAQETVRGQCASRTALASSMTSKPRMLGLLATESFSALLPGVELMRMEASQPRTKQSWKCIRMSPAPTPGSRAIPRRTALRTISSACGHE

Sequence

>CNT30473406
GTTTGATTTCACAGACTCGAAGAGAAAACAATCTCACGATAATTATGACGTATTGACGTGTGGAACATATAAACAAATAATAATTAGCTAAACTTGACTA
GTAGTGGTTGACGACGAAGCACTTCTCCCTGATCTCTCCCTCGTTGCCGGTGAGCACCTGGACCTTGCCCATCTTCACCATGGCCTTGGCGAACTTGACC
TGCCATGCCTTCTCGACTGCGGCGTTGAAGTGGACCATTCCGGCCGTCCAGGGGTTCTCGAGCAGCGTGTTGTCGGAGATGAACAAGACCTTGTGCGCCA
GCACGTTCTTGTAGTACTGGTTGTCGAAGGTCGCCGGCGTGACTGGGTCAAGCGGCACTACCGTGGGGTCCATCTGGGCGTCGCTGGACGGCCATGGGCA
GCGGATCTTGAGGTGCTCGGCGTAGGCGGGGTCGAGCGACGGGTCTGTCCGCCCCAGCTGGCCGCTGAAGTTGTAGAGGCGCTGCGTGAAGGAGGAGCAG
TGGGAGCGGCCGATGGTGTGCGCGCCAGAGAGCGTGACCATGTCGTCGGCGTTGAGGCCCTTGCGCTTGAAGCTCTCGATGAGCTCGGCGACATCGTCAG
TCGGGGCGGGGACATTGTTGTTGAGCACCTCATCCTCTTTGGACACGCGTCCGTCACGGCGGCCCGAGGGGACCTTGTAGTCAAGGCCGCCGGCAAGATA
GGCGCCGTCGCGGGCCGCGAACGCGATGATGTCGGCGCAGGAGACCGTGCGCGGGCAGTGCGCCTCGAGGACGGCCTTGGCGTCGTCGATGACGTCGAAG
CCGCGCATGCTGGGATTGTTGGCGACGGAGTCCTTCTCGGCCTTGTTGCCCGGCGTGGAGTTGATGAGGATGGAGGCATCGCAGCCCCGGACGAAGCAGT
CGTGGAAGTGCATCCGGATGAGTCCCGCGCCGACGCCAGGCTCACGGGCGATACCGCGGCGGACGGCGTTGCGCACGATCTCCTCGGCCTGTGGGCACGA
G