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Detailed information on CNT30473044


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 5e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696173Saccharum spontaneumOryza sativa48.3552.3390.14426forward
CNT30187536Saccharum spontaneumSecale cereale55.5156.2190.39489forward
CNT30301046Saccharum spontaneumTriticum aestivum55.5159.1390.59489forward
CNT30393967Saccharum spontaneumTriticum turgidum42.6862.6792.55376forward
CNT30554920Saccharum spontaneumOryza glaberrima48.4757.9490.4427forward
CNT30251938Saccharum spontaneumAvena sativa55.2861.5790.76487forward
CNT30685781Saccharum spontaneumTriticum urartu45.8646.3390.59404forward
CNT30369202Saccharum spontaneumOryza glumipatula40.9840.5292.52361forward
CNT30108138Saccharum spontaneumOryza longistaminata49.8354.292.03439forward
CNT30103236Saccharum spontaneumOryza rufipogon55.7349.7591.04491forward
CNT30574663Saccharum spontaneumOryza barthii55.7359.6691.24491forward
CNT30115779Saccharum spontaneumOryza nivara39.3966.193.08347forward
CNT30603587Saccharum spontaneumOryza punctata39.2768.1193.06346forward

Expression of CNT30473044

Peptides detected in this lncRNA

>peptide 1 (46 aa)
DIFTLVTVRIARRMPCRSPVTTKSHPEKLSKIQRPSSDQTPDFSGK*

>peptide 2 (76 aa)
MAWTKNPNMENMARRPFLSSFTLSSAKASGSSARPSGSGNTQPSAPSMAQREWITSSSRFLANVSGSADSPAVSQP*

Sequence

>CNT30473044
AGATATTTTTACTCTAGTCACTGTAAGGATCGCTAGAAGAATGCCTTGCAGAAGCCCTGTGACCACAAAATCACACCCAGAAAAGTTGAGCAAAATTCAG
CGGCCCTCTTCTGATCAAACACCCGATTTTTCAGGCAAATAAAATCGACAGTGATGAATGAAAAAGGAAAAAAAATGAGTCGTATTGGACGCGGCGCGAG
ATAATGATTAATGAACACAATTATTCCTTCTTGATTGAACCCTGGTAATTTACATCATGGTACAAACTGAAACCAGTGCGCGCTCAGGTGCATCCGGACA
CCTCCTTCACTTGCCGGGCACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCAAGGTTCTCGAGCGGGCCCTTG
CCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGCCTCGGGGT
CGTCGGCGAGGCCGAGCGGCTCGGGGAACACGCAGCCGAGCGCGCCCAGCATGGCCCAGCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGT
CTCGGGGTCCGCGGACAGCCCGGCCGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCCGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCCAGGTAG
AGCACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCGCCGGCTTGGCCTTCGCCGCCGTCTTGCGCATCGTCACGCGGGCCTCGCCGAACAGGG
ACGACGGCACGTTCACGGCCTTGCCGGCGAAGGCCGTGGAGGAGAGGGCCATGGTGCTGCTCGCCATTGCGCTGCTTCTGC