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Detailed information on CNT30472723


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 1e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30393237Saccharum spontaneumTriticum turgidum53.4460.9492.45543forward
CNT30684772Saccharum spontaneumTriticum urartu53.4460.4792.27543forward
CNT30721831Saccharum spontaneumTriticum spelta35.9343.0991.51365forward

Expression of CNT30472723

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPCRSPVTTKSHPEKLSKIQRPSSDQTPDFSGK*

>peptide 2 (34 aa)
NGWTALIEKNSTTDQQCSIKLNTRYFYSSHCKDR*

>peptide 3 (29 aa)
MAQREWITSSSRFLANVSGSADSPAVSQP*

Sequence

>CNT30472723
AATGGCTGGACTGCACTGATCGAAAAAAATTCAACAACGGATCAACAATGCAGTATAAAGCTAAACACAAGATATTTTTACTCTAGTCACTGTAAGGATC
GCTAGAAGAATGCCTTGCAGAAGCCCTGTGACCACAAAATCACACCCAGAAAAGTTGAGCAAAATTCAGCGGCCCTCTTCTGATCAAACACCCGATTTTT
CAGGCAAATAAAATCGACAGTGATGAATGAAAAAGGAAAAAAAATGAGTCGTATTGGACGCGGCGCGAGATAATGATTAATGAACACAATTATTCCTTCT
TGATTGAACCCTGGTAATTTACATCATGGTACAAACTGAAACCAGTGCGCGCTCAGGTGCATCCGGACACCTCCTTCACTTGCCGGGCACGAAGTTGGTG
GCGTAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCAAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGA
ACATGGAGAACATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGCTGAAGATCTGTGACCCGGCCTTGAA
CCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAACACGCAGCCGAGCGCGCCCAGCATGGCCCAGCGGGAGTGGATCACCTCC
AGCTCCCGGTTCTTGGCGAACGTCTCGGGGTCCGCGGACAGCCCGGCCGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCCGTCAGGTAGCTCGGGGGCT
CGCCGGAGAGCGGGCCCAGGTAGAGCACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCGCCGGCTTGGCCTTCGCCGCCGTCTTGCGCATCGT
CACGCGGGCCTCGCCGAACAGGGACGACGGCACGTTCACGGCCTTGCCGGCGAAGGCCGTGGAGGAGAGGGCCATGGTGCTGCTCGCCATTGCGCTGCTT
CTGCTTTGCACTGGTT