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Detailed information on CNT30472632


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 5e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696918Saccharum spontaneumOryza sativa8.2881.1692.59405forward
CNT3043803Saccharum spontaneumPrunus dulcis2.7225.3881.95133forward
CNT30295032Saccharum spontaneumTriticum aestivum4.3440.6186.79212forward
CNT30391876Saccharum spontaneumTriticum turgidum4.5810088.39224forward
CNT30562499Saccharum spontaneumActinidia chinensis1.737.3992.7783forward
CNT3083687Saccharum spontaneumVigna radiata4.1721.4583.33204forward
CNT30555554Saccharum spontaneumOryza glaberrima8.6952.0291.76425forward
CNT30438780Saccharum spontaneumAegilops tauschii8.5952.388.57420forward
CNT30247768Saccharum spontaneumAvena sativa7.1857.7387.46351forward
CNT30663140Saccharum spontaneumTriticum dicoccoides7.1650.7287.43350forward
CNT30136796Saccharum spontaneumLolium perenne4.1729.8789.71204forward
CNT30232050Saccharum spontaneumAnanas comosus5.0321.680.89246forward
CNT30721366Saccharum spontaneumTriticum spelta5.0548.0587.85247forward
CNT30365247Saccharum spontaneumSorghum bicolor5.3638.5996.18262forward
CNT30151249Saccharum spontaneumBrachypodium distachyon6.7963.7292.47332forward
CNT30104226Saccharum spontaneumOryza rufipogon6.7368.8391.49329forward
CNT30581659Saccharum spontaneumEchinochloa crusgalli3.9930.2891.28195forward
CNT30496990Saccharum spontaneumDigitaria exilis5.0949.487.55249forward
CNT30117820Saccharum spontaneumOryza nivara8.6954.4992.71425forward
CNT30176592Saccharum spontaneumVigna angularis4.1725.0385.29204forward

Expression of CNT30472632

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRAKQHLDIAPPESSSNDRKRSGKLGQYRQRSSKRGQASAQR*

>peptide 2 (29 aa)
MAFMLCLWDEHVPTFTPFFSLCQLVAIHV*

>peptide 3 (32 aa)
MDIWYCCPVATKFRSCQQLLLFLWVIWRLLYF*

>peptide 4 (32 aa)
MFGTSRLPQWQLHSACGMNRSLRCTTILFTVS*

>peptide 5 (59 aa)
MFCDHEDHMINHLWSSVNLAAGINMVLSSILNFGLMRWNFWVQCRTYVWDFTSAPMAIA*

>peptide 6 (44 aa)
MSMSLNLDRPASRMGSKALRRSISGRMSSIGTPFTLISPRPGLV*

>peptide 7 (35 aa)
MGNVHPPYYPVIYVLFTCLNTACLKCHVFWSNTLP*

>peptide 8 (33 aa)
MLMDPPERASLGNAGNHKFNETGLNRQNPMSTI*

>peptide 9 (39 aa)
MFHDSICTDHSLAAVFVILKMEHKIAYLTTFASNLSIRL*

>peptide 10 (38 aa)
MCFGVIRCPDGNNSACGVSRSQCLPPFVPLSCYPYIIS*

>peptide 11 (40 aa)
MGWALEGKLASCEAQVCVRCDKRPRGEGEEARVSALTNTT*

>peptide 12 (44 aa)
MRARNQAPNTEEDMIKEMGILTNRQIPSAETYKLRLHRYRFLNS*

>peptide 13 (48 aa)
MHLWPCVSRICSVYDVWLPLLILGATLPINQLRGLLASIEKQLMAFYW*

>peptide 14 (46 aa)
MYYHIIHCELMLCFPLIIKDKDWKFSYIVLCSMIQSVLIIRLLQFL*

>peptide 15 (62 aa)
MIGNDLASWDSTGNGPASAGKQALNGRTSGTWRGRRDHRTSWARSAWGRRRGGCGRSVRRCP*

>peptide 16 (76 aa)
MTTTRGRSARDDGRAGSPQTQAIRDVLLSFAVFFSNPLRCSFRIITSIFYFKRIIFLSVEWLLFYFVLINRFISAV*

>peptide 17 (97 aa)
MNCNNRGHQTKERYLTNQNSECNHLAIQNVLHATSITEGDLLKGIIQIIKMKPFGKSKLLILYNLQFLYCHFSVSLHMGCRNHESQKSSTKYRRRHD*

Sequence

>CNT30472632
GGAATAAATTACAGCTCAACATGGTCCAACTCATTCAGAACTGAACTACAGCTCAACATGATGCAACTCACTCAGGAATGAATTACAGCTCAACACGATG
GTTTCTTTGTGTTAATATAAGCCAGCTTTAACTCCAACAAGCAGAATGAGCTATCAGATGAGATCACATTAAACCAAGCAGTGGGCATTCAAACTAAGAA
GAAAAAGATAGAATTGAACCAAAATGCTTAATCTTCCACATGCTCATGGATCCACCAGAAAGAGCATCACTAGGCAATGCAGGCAACCATAAATTCAATG
AAACAGGATTAAATAGACAGAATCCCATGTCCACTATCTAGCGGAAGATAAAATTACATACAGGCTTGCAGCCATTTTCCCCATCTCAGCAACAACGTTC
GATTAATATGTTACAACTAAGCTTCACGCATTTTTTTCGTATGATGTATGATACAGCAAAATCCTAATCATATATGATACTACACCAAAATCCTAAACAC
GTCACCAGATATGAACTGTAATAATAGAGGACATCAAACAAAGGAAAGATACCTGACCAATCAGAATTCAGAATGTAACCATTTGGCAATTCAAAATGTT
TTACATGCCACATCCATAACAGAAGGGGATTTGTTAAAAGGCATCATACAGATAATCAAAATGAAACCATTTGGCAAATCGAAACTTTTGATACTTTACA
ATTTACAATTTCTTTACTGTCATTTTTCAGTGTCGCTTCACATGGGCTGCAGGAACCATGAGAGCCAGAAATCAAGCACCAAATACAGAAGAAGACATGA
TTAAAGAGATGGGAATCCTCACAAATCGTCAAATCCCATCAGCAGAGACGTACAAACTAAGGCTACATAGATACAGATTCCTAAATAGTTAATACCAGAT
GGACTAGCGTGTTCAACATTTGCTACATAGATCCAACATGAACCAAACATCACTTAAACTGAGAATCACTCATCTACCAAATATGTAGAACCACACCAAT
CATGCTGTCCATCCATAAAACAAACACAAATAAACATAAAATTTTGACAGAAATCCAAGTAAAATTTAAACACTAATCTTGCCCTCAAATAGCATAAATA
TGAACAAAACAAAAAAAACGGACGTTGACACCTACAAATTGCCAAGAATGCCATCAGGTTCTGTAAAGTTGTATCATCTAATCTAGTCAGCTAAACACTA
ACACAACTAATCAGCACTAATGAACGTAAGAACAAGAATACATGCTGCGAAACTGAAAGGCAACCAGTACATATCATAAATTTATGACAAATACATTATA
AATTCCTTAACACAGGTAACAAGCAAAACAAAACTTCAGAGGTAGTCTTCAAAATTTCTCACATTTCATATCACAATGTCAAAAAGATTCAAGACTTAAA
AAGTCTAAAGATGAGGGCAAAACAACACCTAGATATAGCACCACCAGAAAGTAGCTCCAATGATAGGAAACGATCTGGCAAGTTGGGACAGTACAGGCAA
CGGTCCAGCAAGCGCGGGCAAGCAAGCGCTCAACGGTAGGACTTCTGGAACCTGGCGCGGGCGCCGCGACCACCGAACTTCTTGGGCTCGCAGCGCCTGG
GGTCGGCGACGAGGAGGGTGCGGTCGTAGCGTGCGAAGATGTCCTTGACCTCCTTCTTGGCGGCCTCGTCGACGTACTTCTGGTAGTACGCGACAAGCCC
CTTGGCGACGGCCTGGCGGATGGCGTAGATCTGCGACGTCTTCCCGCCGCCGCGGACGCGGATCCGCATGTCGATGTCCTTGAACCTGGACCGCCCCGCC
AGCAGGATGGGCTCGAAGGCCTTGAGGCGGAGCATCTCCGGCCGGATGAGCTCGATCGGGACGCCGTTCACCTTGATCAGCCCGCGCCCCGGCTTGGTGT
AGGCCACGGCCACGGCCGTCTTCTTCCGGCCGAAGCACTGGACCGTGCCCGCGGCCGGGCGCTGCAGCACGGTAGACATGGTTGCGGGAATCGCAGCGGC
GGCGACGGCGACGGCGCGCTAGGGCTGTGGCGGCGAGGGGAGGTGGCGGCGGATTAGGGGGGAGCGCAAGGAGAGGAACGCTTTTATAGCTCGGATTAGA
ATCGTTAGGGTTTTGTGGGATCGCCGCTGCTCGGAGAATGACATGTGGGGTCGAGAGGTTTTGTTTATGGTTTCTGGGCCTGAGTAGTTCTTGGGGGCCC
ATTTTATGGTGAGAACTTAATGGGCTGGGCTTTAGAAGGAAAACTGGCGAGTTGTGAGGCCCAAGTGTGTGTTCGTTGTGATAAAAGGCCACGGGGGGAG
GGCGAAGAAGCTAGGGTTTCGGCCCTCACGAACACTACTTGATCTTATCCGAGCGAGCCGTCCGGCGGCGCCGCGGCGGCCGGAGTCGCCTCCCCGTGGC
CGTGTTGCCCCCGCCGGCCTGCAAGGGTTAGTGGGTTGGTGGCGCGGTTCGTCGGAAAGAGGCGGCGCTGGCACCCGCGGCTGCTGCCGGCGACGAGCGA
TGACGACTACCCGCGGTCGGAGCGCGCGCGATGATGGCCGCGCGGGTTCACCCCAAACACAAGCAATTCGCGATGTTCTGCTTTCCTTTGCGGTGTTCTT
TTCTAATCCTTTGAGGTGTTCTTTTCGAATAATTACAAGTATTTTTTATTTTAAAAGGATTATTTTTTTGTCTGTTGAATGGCTTCTGTTTTATTTTGTG
CTTATTAATCGTTTTATTAGTGCGGTCTGAATCTATATCACCTTCGCGTAATTGACAAAGTGATTTGGTTCCGGAATGATATTGACGAAGAATAGTGTGC
CTAGCTACCTACTTTTGTTTTAGGCGGTTCTGTATTGCGCGTGACCTTTTGGATCTTTGTTCGCAATGAGTTAATATTATGTGCTTGTTACCTTGCTGGG
TTCTGCTGTACTATAGGGGCTCGATGGTGGGTTTTAAACTTCGTTCTGCATAAAGATTTTACTGATGTAAACATCTGCATATCATTAAATTGTCTGTATC
AGTATCAATAGTCATTGCACTTGCCTAGTTTCTACCACCTGTTGCAATCCTCTGCATATCTGAAATTAATTCATACTGTTGCATTGATAGTTATCCTCAT
GGTTAAACATTTAGAATGCACTTGTGGCCATGTGTATCACGAATTTGCTCAGTGTATGATGTTTGGCTGCCTTTGCTCATATTAGGTGCTACACTGCCAA
TCAATCAACTAAGGGGTCTGTTAGCTAGCATAGAAAAGCAGCTAATGGCTTTTTATTGGTAAGACTATTAGCTAATCTATTAGGTTGGCCCTGTTTGAAT
TCTCCATCTAATTGTTAGTGGTATTTAGCCTGGTACTTAGCTAACCTTTAATTAGCTATAGGTAGTGCATTTTCAGCTATTAGTTATGGATCTATCTAAA
CAGGCCCTAAAGGAACTCGGCCTTGCTTGACAAGTTGACATGATTATGCATGTTTTGTGATCATGAGGATCATATGATAAACCACCTTTGGTCCAGTGTT
AATTTAGCGGCTGGCATTAATATGGTATTGAGCTCCATCCTCAATTTTGGATTAATGAGGTGGAATTTTTGGGTACAGTGTAGAACTTATGTTTGGGACT
TCACGTCTGCCCCAATGGCAATTGCATAGTGCCTGTGGGATGAACAGGTCCTTGAGATGTACTACCATATTATTCACTGTGAGCTGATGTTATGTTTTCC
GCTAATCATTAAGGATAAGGATTGGAAATTTTCATACATAGTTTTATGTTCCATGATTCAATCTGTACTGATCATTCGCTTGCTGCAGTTTTTGTGATTC
TTAAGATGGAACACAAAATTGCTTATTTAACCACCTTTGCTTCTAACTTATCCATTAGACTTTAAGTTTAACCTGACATGTCATATATTTGGGACTTTTA
AGTTTCCCCTATGGCTTTTATGCTGTGCCTGTGGGATGAACACGTCCCAACATTTACTCCATTTTTTTCACTTTGTCAGCTAGTAGCCATACATGTTTAG
CTGATCATTAAGAATGGGAAATGTACATCCTCCATACTATCCGGTTATATATGTTCTGTTTACCTGCTTGAACACAGCTTGTTTGAAGTGTCATGTGTTT
TGGAGTAATACGCTGCCCTGATGGCAACAACAGTGCCTGCGGGGTGAGCAGGTCCCAATGTTTACCACCATTTGTCCCACTTAGTTGCTATCCATACATT
ATTAGCTGATCATTTGTGAAAAGGAAAAGTTAACAAATTTATTATTGAATTTATTATGCTAGGTTGTCAGATGCATATTCTTTTGTTTAAACTTTGTTGA
ACGATTGGATCATAATTTGTCCTGCAACTTACAAGTAATGTGCCCTATCGTTTATTTGTAGCCTTTTGTTTTCCCAGCTTTGTACCTTGAAAATGTGATT
TCATGGTGGCTGATTTTGTGCCTTTGTGATTTAGCCTCGTAGTCCTATGGGTCAACAGCAAGCCTGTGCTTGGCTTAAAGCTACAAAGAGGATAATATGT
TGAACTTATTTGCCTTGGTAATGTTTTAGGCTTACAGGTCCACTTGCTCCTGCTGTGATTCTGATGCTAATTGACTTGAAGGCTCTCAATGAAGCAGAAA
GATGTTGCTGCCTTGCAGAATGAAGTTGGAGTTAAATACATGGAATGGATATTTGGTATTGTTGTCCTGTAGCCACAAAATTTAGAAGCTGTCAACAATT
GTTATTATTTCTCTGGGTGATATGGCGCCTGCTGTATTTTTAATTCTGACTGATTCCTACTTCTCAAGTGCAGATTCAGTGTGATAGTGGTGGCATTCTG
CTGCTATGTTAACATGTTCACTGTAAACAAATTGCTTGCTGAAATGAGTTAGCATGTGTGTTGCTATCTGTTTACATGTGAGCAAATCG