Detailed information on CNT30472461


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499788Saccharum spontaneumCoffea canephora15.3523.4693.4276reverse complement
CNT30403020Saccharum spontaneumBeta vulgaris13.5424.5497.0167reverse complement
CNT30653503Saccharum spontaneumRosa chinensis12.9325.396.8864reverse complement
CNT30214655Saccharum spontaneumHelianthus annuus12.7329.0396.8363reverse complement

Expression of CNT30472461

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSFGTGFLEPWSLPSFGDVQMGDGFLCPCGV*

>peptide 2 (54 aa)
MSRWGMASCALVVYESACVPTTCFSYIWCLYLSHPLRIQFAFNANRLAAVMTET*

>peptide 3 (36 aa)
MNPHVFPQPASLIYGAFICHTHYEFSLHSTQIVWLL*

>peptide 4 (35 aa)
IRALRESNSRPLAPKARIIPLDQTPCLRIIYANRY*

>peptide 5 (35 aa)
MCSHNLLLLYMVPLFVTPTTNSVCIQRKSFGCCDD*

>peptide 6 (32 aa)
NKGVARIELATSRTQSENHTTRPNALFENNLC*

Sequence

>CNT30472461
CAATAAGGGCGTTGCGAGAATCGAACTCGCGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAACGCCCTGTTTGAGAATAATTTATGCTAA
CAGATATTAATTTATTTACTAGTAATACGCCCATTCCCCATCCGGAATGAGTTTTGGCACCGGATTTCTCGAACCTTGGTCGCTACCTTCCTTCGGTGAT
GTCCAGATGGGGGATGGCTTCCTGTGCCCTTGTGGTGTATGAATCCGCATGTGTTCCCACAACCTGCTTCTCTTATATATGGTGCCTTTATTTGTCACAC
CCACTACGAATTCAGTTTGCATTCAACGCAAATCGTTTGGCTGCTGTGATGACTGAGACTTGACATGGGCACATGCCTAACCATTCTTCCTTTTTACAGT
GCTGGATGTAGCAGAGTCGACCTGGGATGACCTCGTCCTTCGCTGCGAGTCTCCGGTGCTCGTCGAGTTCTGGGCACCATGGTGCGGCCCTTGCC