CANTATAdb - search

Detailed information on CNT3047206

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30730489	Prunus dulcis	Corchorus capsularis	65.67	100.08	95.23	1236	forward
CNT30176196	Prunus dulcis	Vigna angularis	65.2	81.64	95.11	1227	reverse complement

Expression of CNT3047206

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERALQNQRGKKTPLSLTLVRLCEMT*

>peptide 2 (31 aa)
THRPNQLAPKWMALKRATYTRPSGQVPGPDE*

>peptide 3 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLCRISGERRPR*

>peptide 4 (85 aa)
MEQCRQGKSAKWIRNLGKRIGSEGWARGFQSRTRRLSVDCSSCSRGESGSPRAVRGTDWERSFGDFPRASNSRLRTGTDKGNPTV*

Sequence

>CNT3047206
ACTCACCGGCCGAATCAACTAGCCCCGAAATGGATGGCGCTTAAGCGCGCGACCTATACCCGGCCGTCGGGGCAAGTGCCAGGCCCCGATGAGTAGGAGG
GCGCGGCGGTCGCTGCAAAACCTGGGGCGTGAGCCCGGGCGGAGCGGCCGCCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAA
GGCCGAAGAGGGGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCGAAGAGACGGGGGAAGCCCATCAGATAGCGCGTCTCGCGCGAA
CTTCGAAAGGGAATCGGGTTAAAATTCCTAAACCGGGACGTGGTGGTTGACGGCAAGGTTAGGGAGTCCGGAGACGTCGGCGGGGGCCTCGGGAAGAGTT
ATCTTTTCTGTTTAACAGCCTGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCCGCTGGAAGAGCACCGCACGTCGCGTGGTGTCCGGTGCG
CCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCATTCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACATCCTCTGGTCGAT
GGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTTCCAGTCCCGAACCCGT
CGGCTGTCGGTGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGTCCGGGGGACGGACTGGGAGCGTTCCTTCGGGGACTTTCCCC
GGGCGTCGAACAGCCGCCTCAGAACTGGTACTGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGATGCTAACGCAAT
GTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGGCTCTCTTAAGGTAGCCAAATGC
CTCGCCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTTGCA
GAATCAGCGGGGAAAGAAGACCCCGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGTATAAGTGGGAGCTTCGGCGAAATTGA
AATACCACTACTTTTAACGTTATTTTACTTATTCCGCGAAACGGAGGCGGGGCATCGCCCCTCTTTTTGGACCCAAGGCCGGCCTCGCGCCGGCCGATCC
GGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGTGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCT
CGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCTGAATTT
GAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCCAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTT
CCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGGACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTAC
CCTACTGATGACAGTGTCGCAATAGTAATTCAACCTAGTACGAGAGGAAACGTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGC
GAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAAAAGCGACGCATTCGCCCGCCGCCCGT