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Detailed information on CNT30471857


BLAST search results

BLAST vs Swiss-Prot:
sp|P01053|ICI2_HORVU, E-value = 2e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697884Saccharum spontaneumOryza sativa26.2633.8284.57162forward
CNT30104461Saccharum spontaneumOryza rufipogon26.2628.0884.57162forward

Expression of CNT30471857

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MSDLFIYRIFTSGARKEPKLGISQTLISLRGVSGRRCRRRYARGWAQNRWSQSCRRAARRCRRRACP*

>peptide 2 (38 aa)
SCKDGRHFARTCHYLVIIYRKETRRTHPLFGRYTDMNT*

>peptide 3 (62 aa)
MSASGLSLRITFLASSTLSPTTSGHDVLALPPHSGAAAVAVELMVVVVVVVGRDSRIELRIS*

Sequence

>CNT30471857
TCGTGCAAGGATGGACGACATTTTGCAAGAACATGCCATTATTTAGTAATAATTTATAGGAAAGAAACACGACGTACACATCCATTATTTGGCAGATACA
CGGACATGAATACATAGCATGTCCGACTTATTCATTTATAGAATATTCACTTCTGGAGCAAGAAAGGAACCGAAGCTAGGCATCAGCCAGACTCTTATCA
GCCTACGTGGGGTGTCTGGGCGACGGTGTCGACGAAGATACGCACGCGGTTGGGCACAAAATCGGTGGTCACAATCGTGCCGACGGGCAGCACGACGATG
TCGGCGTCGGGCTTGTCCTTGAGGATCACCTTCTTGGCTTCCTCCACGCTGAGCCCGACCACCTCCGGCCACGACGTCTTGGCGCTGCCGCCGCACTCCG
GTGCCGCCGCTGTTGCCGTGGAGCTCATGGTCGTCGTCGTCGTCGTCGTCGGTCGCGATTCGCGAATTGAACTGCGAATCAGTTGATCGATGACGATGCA
AAAAAAAGGAAACAGACTACTACTACATTATTGCAAAAAAAAGAAAAAAAGAAAAGAAAAGCGTAAGGTATAGAAAGGCACACTCACGGGCAAGTGTTGC
TTGTTATCGTGCTTCTT