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Detailed information on CNT30471513


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L4S3|HIRL1_ORYSJ, E-value = 2e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693652Saccharum spontaneumOryza sativa74.5188.9989.25307forward
CNT30675691Saccharum spontaneumSetaria viridis25.9721.6685.98107forward
CNT30521034Saccharum spontaneumSetaria italica85.1999.1586.89351forward
CNT30530635Saccharum spontaneumEucalyptus grandis39.8123.7382.93164forward
CNT30194604Saccharum spontaneumPisum sativum24.5127.1582.18101forward
CNT30441068Saccharum spontaneumAegilops tauschii44.937.4585.95185forward
CNT30262753Saccharum spontaneumBrassica rapa52.9125.1480.28218forward
CNT30219137Saccharum spontaneumKalanchoe fedtschenkoi48.334.3181.41199forward
CNT30370230Saccharum spontaneumOryza glumipatula40.5333.1392.81167forward
CNT30101718Saccharum spontaneumOryza rufipogon54.8539.2491.59226forward
CNT30551158Saccharum spontaneumOryza brachyantha19.4233.619080forward

Expression of CNT30471513

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MRDEHRRSLGRCADLLHGVEVLGDEHHVHDVLGGGARHVHGEPQHAVPQPVHDRLPLPCNAQPGKVLGFRLPLRTLDLHDLLRLCL

>peptide 2 (93 aa)
MSRTAPGPCGMNTDEALDDAPISFMVSKYWVMSTMSMTSLAVVPGTFTENPSTLSLSPSTIACRCRAMPSPERYLASASPSARLICTIFSASAF

Sequence

>CNT30471513
TTTCACACACACACACACACACATAGGTACCAAGCTCCTGAAATGATCATGCTGCTCCAGTCAGCAACAGCAAACTAGTGCTGGGTGACAGAGGAGCCCT
GCAGGAGGCCATCGCGGATCTGTGTGGCGATGTCGCGCACCGCACCGGGACCATGCGGGATGAACACCGACGAAGCCTTGGACGATGCGCCGATCTCCTT
CATGGTGTCGAAGTACTGGGTGATGAGCACCATGTCCATGACGTCCTTGGCGGTGGTGCCCGGCACGTTCACGGAGAACCCCAGCACGCTGTCCCTCAGC
CCGTCCACGATCGCCTGCCGCTGCCGTGCAATGCCCAGCCCGGAAAGGTACTTGGCTTCCGCCTCCCCCTCCGCACGCTTGATCTGCACGATCTTCTCCG
CCTCTGCCTTCT