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Detailed information on CNT30471439


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43193|NLTP1_SORBI, E-value = 3e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697724Saccharum spontaneumOryza sativa87.2231.5290.52232forward
CNT30676686Saccharum spontaneumSetaria viridis79.3254.9591.94211forward
CNT30524155Saccharum spontaneumSetaria italica84.2149.4591.96224forward
CNT30555885Saccharum spontaneumOryza glaberrima89.121.7888.19237forward
CNT30444120Saccharum spontaneumAegilops tauschii23.3114.0390.3262forward
CNT30247616Saccharum spontaneumAvena sativa67.6718.4883.89180forward
CNT30137433Saccharum spontaneumLolium perenne68.828.4684.7183forward
CNT3068317Saccharum spontaneumLeersia perrieri10053.289.85266forward
CNT30682526Saccharum spontaneumTriticum urartu31.215.9685.5483forward
CNT30367388Saccharum spontaneumSorghum bicolor80.4558.9588.79214forward
CNT30597201Saccharum spontaneumOryza meridionalis29.731.3583.5479forward
CNT30371391Saccharum spontaneumOryza glumipatula71.0545.7690.48189forward
CNT30151138Saccharum spontaneumBrachypodium distachyon48.1243.2489.84128forward
CNT30103942Saccharum spontaneumOryza rufipogon54.1449.1593.75144forward
CNT30578263Saccharum spontaneumOryza barthii89.4723.3888.24238forward
CNT30582166Saccharum spontaneumEchinochloa crusgalli28.211.9610075forward
CNT30498573Saccharum spontaneumDigitaria exilis55.2630.8289.8147forward
CNT30117882Saccharum spontaneumOryza nivara55.2633.7993.88147forward

Expression of CNT30471439

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MLTPHLEGMLAALPALRPLMPRAAFLRQLQAVRLSAVVRAAELRLLTPLQQPAEGAEPWPRA*

>peptide 2 (87 aa)
GAVGGGADGVGDADAALGGDAGGVAGVEAADAAGGVLEAVAGGAPVGGGAGGGVEAPDAAAAARGGRGALAAGVGQAGRDGRAHLPAG

Sequence

>CNT30471439
CTGGAGCAGTCGGTGGAGGTGCTGATGGTGTAGGGGATGCTGACGCCGCACTTGGAGGGGATGCTGGCGGCGTTGCCGGCGTTGAGGCCGCTGATGCCGC
GGGCGGCGTTCTTGAGGCAGTTGCAGGCGGTGCGCCTGTCGGCGGTGGTGCGGGCGGCGGAGTTGAGGCTCCTGACGCCGCTGCAGCAGCCCGCGGAGGG
CGCGGAGCCCTGGCCGCGGGCGTAGGACAGGCAGGGCGCGATGGCCGAGCTCACCTGCCCGCAGGT