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Detailed information on CNT30471318


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FR99|ACCO_MUSAC, E-value = 1e-134

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672335Saccharum spontaneumSetaria viridis8.328.397.7890forward
CNT30655679Saccharum spontaneumTriticum dicoccoides48.3462.4691.79524forward
CNT30648126Saccharum spontaneumRosa chinensis10.2424.2985.59111forward
CNT30679210Saccharum spontaneumTriticum urartu26.3874.2991.96286forward
CNT30364964Saccharum spontaneumSorghum bicolor20.213.5185.84219forward
CNT30596880Saccharum spontaneumOryza meridionalis9.0434.3988.7898forward
CNT30582964Saccharum spontaneumEchinochloa crusgalli14.0222.8996.05152forward

Expression of CNT30471318

Peptides detected in this lncRNA

>peptide 1 (33 aa)
PFYAAGDDFGAAALTASNLGSLAWNFCLAYTSM*

>peptide 2 (85 aa)
MERRLPSRMGSTRCHALRYRPLLSTSIWSPVLTTMAPASGCTSVHWPSLSTSRPPTLSSWNSRMTPPASVCARRPVMRSGRGHGG*

>peptide 3 (47 aa)
MLPLSRPRFSSMASMTRSASFRSSARYSRMVSLNAGGSDGHWQPSWM*

>peptide 4 (40 aa)
MSSQSRSSTGATSSPRRSASTRASSVRTGSDALNPASRRR*

>peptide 5 (56 aa)
MPWFTSWKNPHSSQPLAICARVSALSAPSSLEKSITGTTIVNYALGIEDDRVDRLL*

Sequence

>CNT30471318
CCCTTTTATGCTGCTGGAGATGACTTTGGCGCCGCCGCCTTGACGGCCTCGAACCTGGGCTCCTTGGCCTGGAACTTCTGCTTGGCGTACACGTCCATGT
AGTCGCCGAACACGTACTTGGGGTACGCCTCGGCGCCGCCGCTGGCCTGCACCGCCGCCGGCGAGATGGTGGCCTCATTGGCCGGGTTGTAGAAGAGGCG
ATGGAGCGGCGGTTGCCGTCGCGCATGGGCAGCACGCGGTGCCACGCGCTGCGGTACCGCCCGTTGCTGAGCACCTCGATCTGGTCGCCGGTGTTGACGA
CGATGGCGCCCGCGAGCGGCTGCACGTCGGTCCACTGGCCGTCCTTGAGCACCTCCAGGCCGCCGACCCTGTCGTCCTGGAACAGCAGGATGACGCCGCC
GGCGTCGGTGTGCGCGCGCAGGCCCGTGATGAGGTCCGGGCGCGGGCACGGCGGGTAGTGGCTGACCTTGGTGCCGAAGAAGGGCTCGTGCCGGCCGTCG
CCGGAGAAGGCGGCCTTGATGCTGCCCCTGTCGAGGCCGAGGTTCTCGTCCATGGCCTCCATGACGCGCTCGGCGAGCTTCCGCAGCTCGGCGCGGTACT
CGCGCATGGTCTCCTTGAACGCCGGCGGGTCGGACGGCCACTGGCAGCCGTCGTGGATGTAGAAGATGTCCTCCCAGTCCAGGTCGTCCACGGGCGCCAC
CTCCTCGCCGCGCCGCTCCGCGTCGACGAGGGCCTCCAGCGTGCGCACCGGCTCCGACGCCTTGAACCCGGCCTCCCGGAGGCGGTAGCAGTCGGAGCAC
ACCTTCTTGACGCGCTCCAGAAGCTCCAGCGGGATGCCGTGGTTCACGAGCTGGAAGAACCCCCACTCCTCGCAGCCATTGGCGATCTGCGCCAGGGTCT
CCGCCCTCTCGGCGCCGTCCAGCTTGGAGAAGTCGATCACGGGAACCACCATTGTTAATTATGCCTTGGGAATTGAAGACGATCGAGTAGATAGATTGCT
GTGAAGTGTTGTATGTACACAGGTGCTGTAGGGAGCACTTGCTAGTAGGGTTTTGTGTGATGGTTGAGTGAAGGCTAGCTAGCT