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Detailed information on CNT30471244


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 3e-50

BLAST vs NONCODE:
NONGMAT000508, E-value = 5e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523218Saccharum spontaneumSetaria italica32.556.9696.14311forward
CNT30617135Saccharum spontaneumSesamum indicum30.8329.4184.75295forward
CNT30178072Saccharum spontaneumSecale cereale33.1258.4995.58317forward
CNT30284518Saccharum spontaneumTriticum aestivum33.2351.0496.54318forward
CNT30219776Saccharum spontaneumHordeum vulgare25.9158.9196.37248forward
CNT30382783Saccharum spontaneumTriticum turgidum33.2356.8995.28318forward
CNT3086297Saccharum spontaneumVigna radiata32.2926.5783.5309forward
CNT30553196Saccharum spontaneumOryza glaberrima22.9939.4395220forward
CNT30244338Saccharum spontaneumAvena sativa32.656.2295.51312forward
CNT30656490Saccharum spontaneumTriticum dicoccoides33.2351.4696.54318forward
CNT30135649Saccharum spontaneumLolium perenne32.9261.495.87315forward
CNT3015042Saccharum spontaneumZea mays24.4539.5397.86234forward
CNT30679384Saccharum spontaneumTriticum urartu33.0252.1595.89316forward
CNT30720165Saccharum spontaneumTriticum spelta14.9430.4995.1143forward
CNT30620798Saccharum spontaneumCajanus cajan17.4531.9982.63167forward
CNT30325970Saccharum spontaneumAsparagus officinalis22.4731.1685.58215forward
CNT30147953Saccharum spontaneumBrachypodium distachyon32.8136.1394.27314forward
CNT30101647Saccharum spontaneumOryza rufipogon31.0331.8796.63297forward
CNT30117618Saccharum spontaneumOryza nivara23.0949.1195.48221forward

Expression of CNT30471244

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MASSARVGDGFPRSSRLQAAGLKVRLVVLGAWVGGTRGEGFKRRRAVGGGRWLPFDAEGMDGWDGEAG*

>peptide 2 (54 aa)
MIQITCQSYNSDKPTTARDELQRVPETFLTARLVGTARQHRSCRRGDIEGSPPA*

>peptide 3 (32 aa)
MSPEMRFTPPLLASRRIAGLVMPWMLSRSTFR*

>peptide 4 (57 aa)
TELGNQSIQTCYPGILAIANQTNQRLSIAGIKHEFSIVITTGFTEQKRRPAYYIHLH*

Sequence

>CNT30471244
ATACTGAACTAGGGAACCAAAGTATCCAAACCTGCTACCCTGGCATTTTAGCTATCGCAAATCAAACAAACCAGAGGCTTTCAATTGCAGGCATCAAGCA
CGAATTTTCCATCGTAATAACAACAGGATTCACAGAACAGAAAAGACGACCAGCATACTACATTCACTTGCATTGAGGAGTGACAGGTTGCAAAACAAGC
TTTGATTTCCAACATCTGATGTTCACATGATTTCGATACTGCATGATTCAGATAACCTGCCAGTCTTACAATTCAGATAAACCTACTACAGCCAGAGATG
AACTACAAAGAGTTCCTGAAACTTTCTTGACCGCAAGACTTGTTGGCACGGCCAGACAACATCGCAGCTGCAGAAGGGGGGACATCGAGGGGAGCCCACC
AGCCTAGCCGCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAG
GTGACAGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTCACGCCGCCCCTCCTCG
CCAGCCGCCGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGCAGCACCTTCCGGTGACGCTTCGCGCCGCCCTTGCCGAGCCCCTTGCCGCCCTT
GCCGCGCCCAGACATGGCTTCTTCCGCTCGGGTGGGTGATGGATTTCCTCGGAGTAGTAGACTGCAGGCGGCGGGACTGAAGGTGAGATTGGTGGTGCTT
GGAGCGTGGGTTGGGGGAACGAGGGGGGAGGGGTTTAAAAGGAGGCGAGCGGTGGGAGGAGGGCGGTGGCTGCCGTTCGATGCGGAGGGAATGGACGGGT
GGGATGGGGAGGCGGGGTAGGAGGCCGCGGATCGCTGACGTGGAGTGAGGCGCGGAT