Detailed information on CNT30471212


BLAST search results

BLAST vs Swiss-Prot:
sp|P01053|ICI2_HORVU, E-value = 6e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697502Saccharum spontaneumOryza sativa13.2629.0291.392forward
CNT30555553Saccharum spontaneumOryza glaberrima23.3426.8284.57162forward
CNT30578432Saccharum spontaneumOryza barthii22.9135.185.53159forward

Expression of CNT30471212

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MSASGLSLRITFLASSTLSPTTSGHDVLALPPHSGAAAVAVELMVVVVGRDSRIELRIS*

>peptide 2 (67 aa)
MSDLFIYRIFTSGARKEPKLGISQTLISLRGVSGRRCRRRYARGWAQNRRSQTSRRAARRCRRRACP*

>peptide 3 (56 aa)
PLSYIHSCKDGRHFSYIHSCKDGRHFARTCHYLVIIYRKETRRTNPLFGRYTDMNT*

>peptide 4 (32 aa)
PFHIFIPARMDDIFHIFIRARMDDILQEHAII*

>peptide 5 (52 aa)
MTMQKKETDYYYIIAKKKKKEKKSVRYRKAHSRASVACYRASLDCWCLLYEAS

>peptide 6 (37 aa)
SPFIYSFLQGWTTFFIYSFVQGWTTFCKNMPLFSNNL*

Sequence

>CNT30471212
TCCCCTTTCATATATTCATTCCTGCAAGGATGGACGACATTTTTCATATATTCATTCGTGCAAGGATGGACGACATTTTGCAAGAACATGCCATTATTTA
GTAATAATTTATAGGAAAGAAACACGACGTACAAATCCATTATTTGGCAGATACACGGACATGAATACATAGCATGTCCGACTTATTCATTTATAGAATA
TTCACTTCTGGAGCAAGAAAGGAACCGAAGCTAGGCATCAGCCAGACTCTTATCAGCCTACGTGGGGTGTCTGGGCGACGGTGTCGACGAAGATACGCAC
GCGGTTGGGCACAAAATCGGCGGTCACAAACGAGCCGACGGGCAGCACGACGATGTCGGCGTCGGGCTTGTCCTTGAGGATCACCTTCTTGGCTTCCTCC
ACGCTCAGCCCGACCACCTCCGGCCACGACGTCTTGGCGCTGCCGCCGCACTCCGGTGCCGCCGCTGTCGCCGTGGAGCTCATGGTCGTCGTCGTCGGTC
GCGATTCGCGAATTGAACTGAGAATCAGTTAATCGATGACGATGCAAAAAAAGGAAACAGACTACTACTACATTATTGCAAAAAAGAAAAAAAAAGAAAA
GAAAAGCGTAAGGTATAGAAAGGCACACTCACGGGCAAGTGTTGCTTGTTATCGTGCTTCTTTGGACTGCTGGTGCTTGTTATATGAAGCGAGT