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Detailed information on CNT30471194


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M015|Y5161_ARATH, E-value = 9e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672970Saccharum spontaneumSetaria viridis7.7453.8892.8125forward
CNT30435404Saccharum spontaneumAegilops tauschii6.4421.4986.54104forward
CNT30370272Saccharum spontaneumOryza glumipatula9.2920.7283.33150forward

Expression of CNT30471194

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVVCFYFIFFFLLFPFFFWCAGKEVRLCSAEQGL

>peptide 2 (55 aa)
MGEERWSTASVWFGEQGKEKSGWLFVFILFSFFFCFLFFFGALGRRCACALQSRVC

>peptide 3 (73 aa)
MSRSLQSNPQPQVGHSRKFSIPKSAEAMPTENSRLSPRRVTSTMLIQRKRILTETPWRLERWSGVILPVILVW*

>peptide 4 (29 aa)
MENSQTEDPVPDAEASSVAVKAPVALSSV*

Sequence

>CNT30471194
TAGTAAACTAGCTATAGTGAAGCAGAAACTGCCATGTCAAAGGTACTAGGTACATAGTGCTTTGTACTAAGCAATTCCACTCTTTTTGGAAGAAAACTGT
AGTGTCCTTAGAAAAATCTATCTCCTTTTGAAATCATTGTAGCAACAATCTCCACACACACACACACACACACAAAGGTCCAAAAGCAAAACTTCATTTC
TTCTCGAAATGGCAAATTAAAGAAGCCTTAAACCAACTACAACAACAGACAAATAAAGCACACCATACATAACTGGCAATTCAACTACAACAAATTAACA
AATTATACTTTTCTATTTCTCATCATTATTTTCCAACTATAAACCAAAAAAAACCTTTGAATGACTTTAAATATTGTTGCAGTTCTCCTCCTTTTTAGGA
AAAAGGTTAACTCCTTTCTTAAATCTGATTGCTTCTGAAGTGAAATCACAGTAGCAACAATGGTGTTGCTCTTGTAAAGTAAAAAGTTACTCTATTACTG
ATTTAAGCTTCTCCCAACTGTGTTAGAAAAAATATTTTGTCCCATCAAAACAGAAAACTGTGTGACAACAAGCACTTGAAGCAACCATCCATAACCATAC
GATTCAACTATCACCACTTCAGAAACAAATTCATATGAGGGCAAACATCTCAATGGAAAGAAGACAATTTCCATAGAGAAATATAAATTAAAATATTTGA
AAGATCTTAATTGCTTCTCTGGCCGTTCCTAAAACTGTCTGAAACAGTTGGTGAAACATGAAATCGAGTCCTGAACTTGCTACCCCCATCCCACATCTAA
AAGCTGGGATCTTTCAAGTTTGCCCTCTTTATTAACCCACATCTACTAAGACATACAGCACTATTAGTAGTGGCAGCTTACAGCAGCAGTCACCGAATCT
GCAGAAGTGGAATTCTAGAAGGCACCTCGCAGGCGCAGCTTGGCGGTGGCGGCCCCCGGCTTCTGGAGCATGAGCAGGTCGTTGCAGTCAAACCCGCAGC
CGCAGGTGGGGCACTCGAGGAAGTTCTCAATCCCGAAGTCGGCGGAGGCGATGCCGACGGAGAACTCGAGGTTGTCGCCGCGGCGGGTGACCTCGACGAT
GTTGATCCAGAGGAAGAGGATCTTGACGGAGACCCCCTGGAGGTTAGAGAGGTGGTCGGGGGTGATCTTGCCGGTGATCTTGGTCTGGTAGCGGAGCGAG
TAGGAGCCCTGGATGGAGAACTCGCAGACTGAGGATCCGGTGCCGGACGCGGAGGCATCGAGCGTGGCCGTGAAGGCGCCCGTGGCGTTGTCGAGCGTGT
AGGCGACCACGCCCTTGGGGAGGATCCCCGGCGGGAAGTCGAAGTCGGCGAGGGCTTCGTACGCCGTCGGATTAGCGAAGGCGCCGCCGCTCACAGCAGC
CGCGGCGGCGACGGCGACGAGGAGGAGACGGTGGGCGAGCATGGCTGATGGGAGAAGAGCGGTGGAGTACGGCTTCTGTTTGGTTTGGTGAACAGGGGAA
GGAGAAGAGCGGATGGTTGTTTGTTTTTATTTTATTTTCTTTTTTCTTTTGTTTCCTTTTTTTTTTTGGTGCGCTGGGAAGGAGGTGCGCTTGTGCTCTG
CAGAGCAGGGTCTGC