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Detailed information on CNT30470896


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30367941Saccharum spontaneumSorghum bicolor58.5339.2789.47247forward
CNT30148777Saccharum spontaneumBrachypodium distachyon20.149.5489.4185forward
CNT30101935Saccharum spontaneumOryza rufipogon21.3321.0388.8990forward

Expression of CNT30470896

Peptides detected in this lncRNA

>peptide 1 (44 aa)
TETATQVMQKNTYIKLNQARGGHWIDDDGIVKPRDVEMNPRRRR*

Sequence

>CNT30470896
CACGGAGACAGCCACACAGGTAATGCAGAAAAACACATATATTAAATTAAATCAGGCACGAGGCGGACATTGGATCGACGACGACGGCATCGTCAAACCG
CGAGACGTTGAGATGAACCCCAGGAGACGGAGATGAGGCAGGCGACCATGCATGAATAATGGCGGGTGCACGCAGTTGACAGGATCTTATTTAGACGCCG
CTACATAGTTTAGTACGCTGGGGGTGGTTGTCTCCTCCTTCCTCCTCGTGCGCCATCGCGGCTGGCTCAGTTGCAGCTGCAGCAGGCGCAGCCGCAGCTG
GTGCCACACTTGCAGCCGGAGCCGCAGCCGCAGTTGCCGTTGCAGCAAGACATGATCACAGGCGAAGGGAGCAGGTGCTGCTGCTGTGCTACTGAAAGAA
GAGGGTGTTGTGCTTGCTTGTG