Detailed information on CNT30470142


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 2e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697140Saccharum spontaneumOryza sativa7.3520.2292.7355forward
CNT30677435Saccharum spontaneumSetaria viridis34.3660.7685.6257reverse complement
CNT30524561Saccharum spontaneumSetaria italica66.1842.4985.05495forward
CNT30549812Saccharum spontaneumIpomoea triloba18.9826.6480.28142forward
CNT30275526Saccharum spontaneumChenopodium quinoa18.7225.3685140forward
CNT307034Saccharum spontaneumZea mays70.9967.386.06531forward
CNT30415958Saccharum spontaneumPapaver somniferum18.7220.2380.71140forward
CNT30581754Saccharum spontaneumEchinochloa crusgalli54.4153.288.45407forward
CNT3065513Saccharum spontaneumSelaginella moellendorffii6.2820.793.6247reverse complement

Expression of CNT30470142

Peptides detected in this lncRNA

>peptide 1 (46 aa)
KTRHGARPLSSPHSSARTPIAHRPQALAGEDETLAFAAAAVVERTR*

>peptide 2 (46 aa)
MIYDVNSPLFRSFLSQKGGADKRKMEEHKPKEQRPKASENKPVMNE*

>peptide 3 (34 aa)
TKLDTAHALSLARILPHAHPSPIAHKRSQERTKP*

>peptide 4 (31 aa)
MACKTIDHNFVLVAWNHGLICFWFPKFCAAAV

Sequence

>CNT30470142
ACAAAACTAGACACGGCGCACGCCCTCTCTCTAGCCCGCATTCTTCCGCACGCACACCCATCGCCCATCGCCCACAAGCGCTCGCAGGAGAGGACGAAAC
CCTAGCTTTTGCGGCGGCGGCGGTGGTGGAGAGGACAAGATGATTTACGACGTGAACTCTCCCCTCTTCCGCTCCTTCCTCAGCCAGAAGGGCGGTGCCG
ACAAGAGGAAAATGGAGGAGCATAAACCAAAGGAGCAGAGGCCCAAGGCCAGCGAGAACAAACCTGTGATGAATGAATGAACATCTCTAGAAACTGCGTT
CAATGCGCAACCAAATTTGATGTCCGTTTGCTCTGTTTAGCATAAAACCAAAGCTTCCAATAATCTTAGTGGTGTCTTAGTTCCCCCTTATAGTGTTTAT
TGCTCTGCTTGAACATGGCAACAGTGCAACGGACATGAAACTTGAACTACCTATGAGACTATTATCAATTTGAGACACCCATGATTGATAACTTTTGAGT
AGCTCTCCTGTTACTGCCGTTGTGGTTGGTACAAAATTGTGGGGTGCCACCATCTTTCATGCTTGCTTTTCCACCTTCCCTTCCTGTAGCCTAGTATCTA
CTGGAGGTAGGGAAGTGGAGAGTAGTTCATAGGATGGATCTTCGGCCGTTGCATGGCATGTAAAACCATAGACCATAATTTTGTGCTGGTTGCATGGAAT
CATGGTCTGATTTGCTTTTGGTTCCCCAAATTTTGCGCTGCTGCTGTC