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Detailed information on CNT30470073


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30150913Saccharum spontaneumBrachypodium distachyon9.3620.6293.7580forward

Expression of CNT30470073

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MNAMVDVRNIEAQGALQVNIHMLYVDRNFKTLRMLSSTTSHLSSTFLRYSEIAADLFVAIISYVYCCGRTYGSVGGK*

>peptide 2 (37 aa)
MAAPVVMGTLWSTTVSTVSPGPKPKRTPQSKPSPVVAW

>peptide 3 (33 aa)
MQSYCMYHAIQYLDTLVLSVNKMSIQHKFQIYL*

>peptide 4 (29 aa)
MFIVADERTGPSEENNHERRLMEDRNSWR*

Sequence

>CNT30470073
ACAGAGCAAAGAAAATCTGAAATAAAAAAGAAAAGGAAAAGAAAAGAATCCTGATACATAAGTGATAAAAAAGTTATGTACAAATTCCCTAGAAAAAGAA
AGATAATTGAAGCTCACAAATCTGCTTAGAATAATAAACATGTAGATATTTGTGATATTATTCAAAAACTAATCAACAACTAAAAATGTAGCCTAGCATC
CCATTTCAGTCGTTTGTGTCCATACCAAACTAATCAACAAATCAAACATTCTGAACTACTCTAGGTATCAGCATGCAGTCTTACTGCATGTATCATGCAA
TTCAATATTTAGATACATTGGTGCTATCTGTCAACAAAATGTCCATACAACACAAATTTCAAATTTATCTGTAACTTGACATCCTAGGTCCTGTCATTCA
TATAATTTTCTAACAAACTTAGCGCATACTTTCTTTCACACAAATGAATGCGATGGTAGATGTGAGAAATATAGAAGCACAAGGAGCATTGCAAGTTAAC
ATACATATGTTATATGTAGACAGGAACTTCAAAACTTTGAGAATGCTATCATCAACTACTTCACACTTGAGCTCCACTTTCTTAAGGTATTCTGAAATTG
CAGCTGATCTCTTTGTTGCTATCATCAGCTATGTTTATTGTTGCGGACGAACGTACGGGTCCGTCGGAGGAAAATAATCACGAACGACGACTGATGGAGG
ATCGGAATTCATGGAGATGAAGGATCATTTCAGGCGGTGATGGCCGCTCCGGTGGTGATGGGGACGCTGTGGAGCACGACGGTCTCGACGGTGAGCCCGG
GGCCGAAGCCAAAGAGGACGCCCCAGTCGAAGCCCTCACCCGTGGTGGCCTGGCC