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Detailed information on CNT30469799


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LC30|RAP21_ARATH, E-value = 6e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692625Saccharum spontaneumOryza sativa4.6334.5388.3177forward

Expression of CNT30469799

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MATNPPTAPETMTTPTPWWSRTAPASARPRRRWPEGPGRRRSAGCGRTG*

>peptide 2 (44 aa)
MTACSSSARNGGRHQTPPPPAAACGSPRPAAGGDGVLSSRRAPW*

>peptide 3 (42 aa)
EQRRVITNCYSYRISWIRGTKRKLTTCLMCAADHHCCMHLVR*

Sequence

>CNT30469799
TAGAACAGAGGAGAGTAATAACTAATTGTTATAGCTATAGGATTTCTTGGATTCGAGGGACAAAAAGGAAGCTAACAACATGTCTCATGTGTGCTGCTGA
TCATCATTGCTGTATGCATCTGGTTAGGTAGGCCCTCGCCATGGCGACCAATCCACCGACGGCGCCGGAGACGATGACGACGCCGACGCCGTGGTGGTCG
AGGACTGCCCCGGCGTCAGCCCGCCCGCGCCGGCGATGGCCTGAAGGTCCAGGTCGCCGCCGCTCTGCAGGATGTGGGCGTACCGGCTGAGGTCCGGGAA
CCCCATCTGATCGGCACCAGCAGCAGCAGCTGCTGCTGCGCTCGGCGGACCTGCAGCGTGGCGCGTCCCCCGCCGCGGAGTCGGCGCCAGCGCCGCCGAC
GTCGAAGCCGTCGCCGCGGAGCCCGGCTGCTGGCAGTGGAGCTGGAGGGCGGCACGGTGGTCCGCGGGGAAGTTGAGCTTGGCCTTGGTGCCCTTGAAGC
GGAGCGCGGCGGCGTCGTAGGCGCGCGCGGCGTCCTCGGCGGTGTCGAAGGTGCCGAGCCACACGCGCGCCGCCTTCACCGGGTCCCGTATCTCCGCCGC
CCACTTGCCCCACGGCCGCTGCCGCACGCCGCGGTACCGCGGCCGCTGCTCCGGCGCCGGCGCGGTCCGGTGCATCACTGAATCAATCCACACACACAGC
AGCAGAGGGAGCGTGTCAGTTCGTCAGAAATGCAACAGCTGGCACCGTTCATATAGCGTGGGCCCACCCGGGCAGAGTCAGAAGCATGCCGATCGGATTG
CCACGTCGGCTCCCGCAAGGCGCAGGCGCACGCGCGCTGTGATTTTTTTTTACTACGGGAAGATCCTCCTTTTTCACTTACAGTGGAGTAATTCATTCAT
AGCACTATTTGATCGACTGTCAATAAACTTTGCAAACTACTCACGAACAACCAAATTTCTTTTTTTATATTAGACAAAAAAAGCTGTAAATTGGATGCCG
TTTTTGTTCTTTTGATCTGATTCGTTTGCAAACATGGGCAGAGTGGAAAGCTAGCTGAATGACATACTCCTATTCACAGAGTTAAAATCGGTTCATCTAC
AGAGGACAGGACTACTAGTAGAGACGCCAAAGGTCAAAAAAGAGCAGAGCACTGTACGTGGGCCCGTGCGCGAACACGTGCGTACCTTGCTGGCCGAGCA
CGGGCGGCGTCGGCTGCGCCGCCGAGCTCTGCCTCCCGGCGCCGACGACGTGCGCGAGCGCCGCGACGATGACGGCGTGCTCGTCCTCGGCGCGCAACGG
GGGGCGCCACCAGACACCGCCGCCTCCTGCCGCCGCCTGTGGGTCGCCGCGGCCGGCTGCCGGCGGCGACGGGGTCCTGTCGTCACGACGGGCGCCCTGG
TGAGCGGCAGGAGCAGCGGCGCCGGCGCTCTCTCTAGGTCCGGGGCGATCCACGCTTGCGTGTGCGCGTGTGCGGTGCCGACGCGCGCGAGGGCGAGGCA
ACGCCCATAGGAGCACGTTGGGTTCACGTGTCCGGCTGTTAGTCGCGCGGTGGTGGGCTTTAGCTTAGCGTCCAAGGAGAAGGAGATTGACGTTGCAGAG
CAGAGGCGATAAGGATGGGACTCACTCGATCACTCGCGTGATGATGATGGGGTAAGTCGACTGC