Detailed information on CNT30468767


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84PD8|SAP11_ORYSJ, E-value = 1e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523658Saccharum spontaneumSetaria italica11.8621.7891.92198forward
CNT30444092Saccharum spontaneumAegilops tauschii11.9224.688.94199forward
CNT30141425Saccharum spontaneumLolium perenne11.8621.4389.9198forward
CNT30102874Saccharum spontaneumOryza rufipogon11.822.4488.83197forward
CNT30117496Saccharum spontaneumOryza nivara11.821.388.83197forward

Expression of CNT30468767

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MRRWRPGSRPGRGCWWPGCPGSRSCWRRASAPAPAAPWAPPPFCRAAP*

>peptide 2 (42 aa)
MDRSTESPPITVRVSSVRPFVRPAPIETPPLVAAPGRDQIRT*

>peptide 3 (37 aa)
MVGLAVMTNHHHQWNGIYYYTTSSSSRAIWQLGNHII*

>peptide 4 (34 aa)
MTSPLFFSFFFQCFSSSSSWSWSHGSNNSQERTA*

>peptide 5 (75 aa)
MYSIEICDCCSTTHQTELYLFPPTGQPPPLQFTLSSHCSFVPPSFSASHDLSPFFLFFFPMLFFLLLMVMVSWIE*

>peptide 6 (51 aa)
MRGVEGAVTRRLGVVQSKARQAAARSLCAETRRGGEERERQSYRPARPGLW*

>peptide 7 (50 aa)
MGGEEGEGEAFLSRGRGTARGRKTGGVRVLRADARQRRAVCPRWLSRGAEW

>peptide 8 (29 aa)
MVQHKHMNGWFSCHDKPPPPMEWNILLYH*

Sequence

>CNT30468767
GCCGGCGGTATTATTAGGCTTGCTCTTGTATTACACAAGCTGAGACGAAGAAAAGCCTCGGAAACAGAGGAGAAGAGAATGGATTAGATGGCCGTGTCCT
ATCTGTCCAGGTGCACGTACCAATCACCAAGCAGCTGGTGAGCTAACCCATCCATCCATCCAATCATAATGGTACAACACAAACACATGAATGGTTGGTT
TAGCTGTCATGACAAACCACCACCACCAATGGAATGGAATATATTACTATACCACTAGTAGCTCGAGCAGGGCGATATGGCAACTTGGCAACCATATAAT
ATAATTTAAATAAATAATTTTATACAAAGGCATAAAATGTATGTATAGTATAGAGATTTGTGATTGCTGCAGCACAACACACCAAACCGAACTCTATCTC
TTCCCGCCAACTGGCCAACCACCACCGCTACAATTTACATTATCATCGCACTGTTCTTTCGTCCCACCTTCTTTCTCTGCCTCCCATGACCTCTCCCCTT
TTTTTCTCTTTTTTTTTCCAATGCTTTTCTTCCTCCTCCTCATGGTCATGGTCTCATGGATCGAATAATTCTCAAGAACGAACAGCGTGACAATCAACAG
TAACCAACACCCTCCATGGATCGACCGATCACCTTCTAATCTTTTTTCTTGTAATAGTAATAATAATAGAAGAAGAAAAAAAAACAAAGGAAGTAAAGAG
AAAAAAATAGAAGAGAGCAAGGAATTCTAGAGGGAGATGGACCGATCCACCGAATCTCCGCCGATCACCGTACGTGTGTCCTCCGTCCGTCCGTTCGTCC
GTCCGGCTCCGATCGAGACGCCGCCGCTGGTTGCCGCTCCGGGACGGGACCAGATCAGAACCTGACGATCTTGGCGGCGCGCACGACGGGGTTCTCCCTG
GCGATGGCGTCCCGGCCGACGGCCTTGTAGTCGAAGCAGCAGTCGTGGCGGTCCGAGTAGCGGTGCGCGCCGCAGAAGAGCTCCCCGCAGCGGCACCGGA
ACCCCGTGAGCCCGACGCGCTTCCGGCAGCTCTGGCACCGGTTCACGGACGAGGACGACGTTGACGTTGACGCCCGGGCCGGCCTGGACGGCGGCGGCGT
CTGCTCCGCGGGCCTGTCGGCGAACACCGCCGGCGCAGACGGCCTCGCCTGCTGCTGCTCGTCGAACTGGAACACCGGCGGCGAGACGGAGGCGGATGAG
GCGGTGGCGGCCTGGAAGCAGGCCTGGCAGAGGTTGTTGGTGGCCGGGTTGCCCGGGAAGCCGCAGCTGTTGGCGCAGAGCGTCAGCTCCGGCGCCCGCA
GCTCCGTGGGCTCCTCCACCTTTTTGTCGCGCTGCGCCATGAGAGGAGTAGAGGGAGCTGTGACGCGGCGGCTCGGCGTGGTTCAAAGTAAAGCCCGGCA
GGCGGCAGCAAGGAGCCTCTGTGCGGAGACGAGGAGGGGAGGGGAGGAGAGGGAGAGGCAGAGCTACCGCCCGGCTCGGCCTGGCCTCTGGTGAGGTGAG
GGTGGGAAATCGGAAATGGGTGGGGAGGAGGGCGAAGGGGAGGCCTTTTTATCGCGGGGAAGGGGAACGGCGAGAGGGAGGAAGACGGGCGGCGTACGCG
TTCTCCGGGCCGACGCGCGACAACGACGTGCGGTGTGCCCCCGCTGGCTTTCGCGTGGCGCGGAATGGCG