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Detailed information on CNT30468723


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 4e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3084841Saccharum spontaneumVigna radiata15.7124.1683.72129forward

Expression of CNT30468723

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MIYDVNSPLFRSFLSQKGGADKRKMEEHKPKEQRPKASENKPVMNE*

>peptide 2 (42 aa)
RLLPQQVATKLDTAHALSLARILPHAHPSAIAHKRSQERTKP*

>peptide 3 (30 aa)
MSDLLLVPQILRCCCPFCVAVLHVNPESVDP

>peptide 4 (29 aa)
MNEYLLKLRSMRNQIRCPFALFSINQSFQ*

>peptide 5 (55 aa)
SPPTPAGRNKTRHGARPLSSPHSSARTPIGHRPQALAGEDETLAFAAAAAVERTR*

Sequence

>CNT30468723
CTCGCCTCCTACCCCAGCAGGTCGCAACAAAACTAGACACGGCGCACGCCCTCTCTCTAGCCCGCATTCTTCCGCACGCACACCCATCGGCCATCGCCCA
CAAGCGCTCGCAGGAGAGGACGAAACCCTAGCTTTTGCGGCGGCGGCGGCGGTGGAGAGGACAAGATGATTTACGACGTGAACTCTCCCCTCTTCCGCTC
CTTCCTCAGCCAGAAGGGCGGCGCCGACAAGAGGAAAATGGAGGAGCATAAACCAAAGGAGCAGAGGCCCAAGGCCAGCGAGAACAAACCTGTGATGAAT
GAATGAATATCTGTTGAAACTGCGTTCAATGCGCAACCAAATTCGATGTCCGTTTGCTCTGTTTAGCATAAACCAAAGCTTCCAATAATCTTAGTGGTAT
CTTAGTTCCCCCTCATAGTATTTATTGCTCTGCTTGAACATGGCAACAGTGCAACGGACATGAAACTTGAACTACCTATGAGACTATTATCAATTTGAGA
CACCCATGATTGATAACTTTTGAGTAGCTCTCATGTTACTGCCGTTGTGGTTGGTACAAAATTGTGGGGTGCCACCATGTTTCATGCTTGCTTTTCCACC
TTCCCTTCCTGTAGCCTAGTATCTACTGGAGGTAGGGAAGTGGAGAGTAGTTCATAGGATGGATCTTCGGCCGTTGCATGGCATGTAAAACCATAGACCA
TAATTTTGTGCTGGTTGCATGGAATCATGTCTGATTTGCTTTTGGTTCCCCAAATTTTGCGCTGCTGCTGTCCTTTTTGTGTTGCTGTGTTGCATGTGAA
CCCTGAAAGCGTGGATCCCGG