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Detailed information on CNT30468674


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Saccharum spontaneumSetaria viridis29.7797.1586.45273forward
CNT30640872Saccharum spontaneumNymphaea colorata30.6437.1280.07281forward
CNT30536082Saccharum spontaneumEucalyptus grandis28.6844.4380.99263forward
CNT30378908Saccharum spontaneumManihot esculenta30.9730.0881.69284forward
CNT30403468Saccharum spontaneumBeta vulgaris35.5542.1281.6326forward
CNT3042435Saccharum spontaneumPrunus dulcis24.7532.882.38227forward
CNT3016767Saccharum spontaneumZea mays71.3286.5191.28654forward
CNT30366537Saccharum spontaneumSorghum bicolor70.0173.6295.64642forward
CNT30596739Saccharum spontaneumOryza meridionalis37.0852.3185340forward
CNT30354836Saccharum spontaneumLactuca sativa27.9244.3782.42256forward
CNT30154770Saccharum spontaneumPrunus persica33.5987.7581.49308forward
CNT30642025Saccharum spontaneumCannabis sativa35.2262.9681.11323forward
CNT30121049Saccharum spontaneumCitrus clementina34.5729.380.44317forward
CNT30577473Saccharum spontaneumOryza barthii36.5361.4784.48335forward
CNT30584421Saccharum spontaneumEchinochloa crusgalli69.979.5389.24641forward

Expression of CNT30468674

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDCIPLTMESNHLVKGMVRMPCAQHMVRTKHLY*

>peptide 2 (35 aa)
CSLEKSDCMESSWGCLESMHVKGCTWLMKDCSLEK*

Sequence

>CNT30468674
TGTAGCTTGGAGAAGTCTGACTGTATGGAGTCATCCTGGGGCTGCTTGGAGAGTATGCATGTGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTTGG
AGAAGTAGGACTGTAGCTCGGAGAAGTAGGACTGTAGCTCGGTGATGTTGGGCTGTATCCTGGCGAGGTAGGGCTGTATGCAGGTGATGTCGGGCTGTAT
GAGGGAGATGTAGGGCTATATGAGGGGGAAGTAGGACTGTATGATGGGGAGGTAGGGCTGTATGACGGGGATGTTGGGCTGTATGATGGTGATGTAGGGC
TATAAGATGGCGAAGTTGGACTGTAAGATGGCGATGTAGGGCTGTATGACGGGGATGTTGGGCTGTATGATGGTGATGTAGGGCTATAAGATGGCGAAGT
TGGACTGTAAGATGGCGATGTGGGGCTGTATGCAGGAGATGTAGGGCTATATGCTGGTGAGGTTGGACTATAAACTGGTGAGGTGGGGCTGTAGCTTGGT
GATGTAGGACTATAGCTAGGAGATGTAGGGCTGTAACTTGGTGATGTAGGACTGTAGCTAGGAGATGTTGGGCTGTAACTCGGAGATGTCGGTGAGTATG
ATGGACTGGTAGGCGAGTAAGTCGGACTTGTTGGGGAGTAATTCGGGCTTGTGGGACTGTAGGTGGGAGAGCCAGGTGTATATGATGGTGAGGTGGGACT
ATAGCTTGGCGATGCAGGGCTGTATGATGGAGAAAGAGGGCTATATCCTTTCTCTGGGGTGAAAACTGGAGAAGATGGACTGTATCCCCCTGACGATGGA
GAGTAACCACCTGGTGAAGGGAATGGTGAGAATGCCATGTGCCCAACATATGGTGAGAACGAAGCATCTGTATTAATGGGGGAAGCCCTGATGTTTGGAC
TCAGCAGATAACTTGGG