Detailed information on CNT30468665


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523412Saccharum spontaneumSetaria italica101.6912.486.31241forward
CNT30555807Saccharum spontaneumOryza glaberrima49.7911.8582.2118forward
CNT30350812Saccharum spontaneumEragrostis tef101.2720.5182.92240reverse complement
CNT30577328Saccharum spontaneumOryza barthii49.797.0882.2118forward

Expression of CNT30468665

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RTGMSAPSTHPVGSWISHGTHLQQEALNWC*

>peptide 2 (42 aa)
SYRHVSTLDTSGRIMDFSWYTFTTGGPELVLRPAMVTRAQAH*

Sequence

>CNT30468665
CTCGTACAGGCATGTCAGCACCCTCGACACATCCGGTAGGATCATGGATTTCTCATGGTACACATTTACAACAGGAGGCCCTGAACTGGTGCTAAGGCCT
GCCATGGTGACAAGAGCTCAGGCTCACTGAAATGAAGGTAATGGTGTGTGCAAGCATGGTGATCCAACCATCATTGTTTTAATATTAGAAGGTTCTGTCC
ATGCCTGCCTGAACAAGCAAAGAGAAGATGCTTAAAG