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Detailed information on CNT30468549


BLAST search results

BLAST vs Swiss-Prot:
sp|Q69QQ6|HSP82_ORYSJ, E-value = 7e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675788Saccharum spontaneumSetaria viridis40.4321.9997.8593forward
CNT30701953Saccharum spontaneumQuercus lobata36.0930.0785.5483forward
CNT30377298Saccharum spontaneumArabidopsis thaliana31.328.9288.8972forward
CNT30282455Saccharum spontaneumChenopodium quinoa34.785.728580forward
CNT3071730Saccharum spontaneumQuercus suber36.0920.4484.3483forward
CNT30566785Saccharum spontaneumActinidia chinensis51.344.3683.9118forward
CNT30311909Saccharum spontaneumCamelina sativa36.0917.5591.5783forward
CNT3061941Saccharum spontaneumArabidopsis lyrata23.0420.3888.6853forward
CNT302051Saccharum spontaneumZea mays33.0433.4896.0576forward
CNT30652736Saccharum spontaneumRosa chinensis34.7813.8286.2580forward
CNT30351629Saccharum spontaneumEragrostis tef55.6539.0293.75128forward
CNT30366950Saccharum spontaneumSorghum bicolor49.5713.3299.12114forward
CNT30596757Saccharum spontaneumOryza meridionalis44.3543.9797.06102forward
CNT30371008Saccharum spontaneumOryza glumipatula41.338.4693.6895reverse complement
CNT30107294Saccharum spontaneumOryza longistaminata56.0947.4393.8129forward
CNT30103405Saccharum spontaneumOryza rufipogon35.6539.0592.6882reverse complement
CNT30175658Saccharum spontaneumVigna angularis4037.2586.9692forward
CNT30558210Saccharum spontaneumPanicum hallii55.6562.1496.09128forward

Expression of CNT30468549

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MMSESSWLISAWKANVSVSEAMAGETTFSPGREEAEAAAAGRRRGARDEGLWEEAA

>peptide 2 (75 aa)
GGVGDELPEEDLLVGVEGVDDEREQLVDLRLEGERLRIRGHGWRDDLFPRTRGGGGGGGREEKRSTRRGFVGGGSE

Sequence

>CNT30468549
TCGGAGGAGTTGGAGATGAGCTCCCTGAGGAAGATCTCCTTGTTGGAGTAGAAGGTGTTGATGATGAGCGAGAGCAGCTGGTTGATCTCCGCCTGGAAGG
CGAACGTCTCCGTATCCGAGGCCATGGCTGGCGAGACGACCTTTTCCCCCGGACGCGAGGAGGCGGAGGCGGCGGCGGCAGGGAGGAGAAGAGGAGCACG
AGACGAGGGTTTGTGGGAGGAGGCAGCGAG