Detailed information on CNT30468477


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201719Saccharum spontaneumPisum sativum42.679.5797.9296forward
CNT30193442Saccharum spontaneumSecale cereale89.3328.4792.04201forward
CNT30292655Saccharum spontaneumTriticum aestivum89.339.9492.04201forward
CNT30223601Saccharum spontaneumHordeum vulgare97.7814.198.18220reverse complement
CNT30511016Saccharum spontaneumSolanum lycopersicum42.6715.2696.8896forward
CNT30362312Saccharum spontaneumSorghum bicolor82.2259.2990.27185reverse complement
CNT30556841Saccharum spontaneumPanicum hallii30.2214.1189.7168forward

Expression of CNT30468477

Peptides detected in this lncRNA

>peptide 1 (73 aa)
KLPMEPVIGCTCTCRDTKTRYSLSFWSIIRLCRRDGRVVQGVALELLCRLLFTEGSNPSLSVSVNSPTLPTTMY

>peptide 2 (32 aa)
QTPYGTCDRLYLYLQGYENSLFTQFLVNNKIM*

Sequence

>CNT30468477
CAAACTCCCTATGGAACCTGTGATCGGTTGTACCTGTACTTGCAGGGATACGAAAACTCGCTATTCACTCAGTTTCTGGTCAATAATAAGATTATGTAGG
AGAGATGGCCGAGTGGTTCAAGGCGTAGCATTGGAACTGCTATGTAGGCTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTCTGTTAATTCAC
CAACGTTACCGACCACAATGTATCA