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Detailed information on CNT30468144


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 4e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619448Saccharum spontaneumSesamum indicum20.2950.1891.42571forward
CNT30197509Saccharum spontaneumPisum sativum25.4131.4194.13715forward
CNT30633270Saccharum spontaneumCapsicum annuum12.5142.3190.06352reverse complement
CNT30221864Saccharum spontaneumHordeum vulgare58.3580.8998.781642forward
CNT30586133Saccharum spontaneumMusa acuminata29.2837.2787.62824forward
CNT30541214Saccharum spontaneumBrassica napus3.0928.6297.787reverse complement
CNT30147395Saccharum spontaneumMedicago truncatula25.4116.8393.99715forward
CNT30439823Saccharum spontaneumAegilops tauschii10.0663.3199.65283reverse complement
CNT30627916Saccharum spontaneumDaucus carota25.319.7394.94712forward
CNT30595572Saccharum spontaneumOryza meridionalis7.2923.9292.68205reverse complement
CNT30574574Saccharum spontaneumVitis vinifera24.8820.895700forward
CNT30104639Saccharum spontaneumOryza rufipogon39.23100.5598.011104forward
CNT30577102Saccharum spontaneumOryza barthii7.1888.9999.5202forward

Expression of CNT30468144

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDGRGLPAPKSDDSLVPLSIGTLWHTTATTPAL*

>peptide 2 (39 aa)
MGIQKNRKMHIFYEILSFHRCIWSETVQYSMRGMQWDGW*

>peptide 3 (44 aa)
MELNQVTLQRHNDSRVGISPPSEPDVRVSPHPALCRGISTHCFP*

>peptide 4 (45 aa)
MGVYRRSQRLARKGCYTKHYYLTTKKEKTIVVTRLTIVVRPAALA*

>peptide 5 (52 aa)
MHFLQSVMEPSSAPPSQKERKEQNSRRRRVEYSQGAFVVRKGPNGRPCSEVH*

>peptide 6 (57 aa)
MEEPSKPVPDDDAPWAKGKGPPFSFFPQSFRSFLSFPFVCLGPRVGSFPPPIYAILCL

>peptide 7 (58 aa)
MRREGKGSRGLSRRSLFPIHPEGFFPSLAPSSYPVLLSAQPYLFISFFYMDIFFLSCS*

>peptide 8 (32 aa)
MKDDLESTQEDRESHIREKVTNGVEPSNIAKA*

>peptide 9 (46 aa)
MPPGRKERGRHSLSFLNRSDHFSHSLLFVWGPGLVRFLLLSTQFSVF

>peptide 10 (90 aa)
MVGAANSDSARISFFGSTKGELAQKLDRGKDAAGCRRLIQVPPEPREMVAYYTAHKLCLGWGYLLFVGGTYGARRASVCCVDCLCISYRV*

>peptide 11 (60 aa)
LASGTTGLMKPIMLDNQILLPSYLSTSLRQKISKVCICLHVPPSMLPLPRKGDYTYSIKN*

Sequence

>CNT30468144
TCTAGCTTCTGGCACAACTGGACTTATGAAACCGATCATGCTGGACAATCAAATACTTCTTCCCTCATACTTATCTACTTCGCTTAGGCAAAAGATTTCA
AAAGTCTGTATCTGTCTACATGTGCCTCCGTCTATGTTACCCCTTCCCCGGAAAGGTGATTATACGTATAGTATAAAAAACTAGAATAAAAAAGAAAGAA
GAGAAAGAACTGGGAGTTGGCGCCTACATAACAGGTAGCTTGCTTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCTCTTATTATTCTTGACTTGACTTA
TTAATAAGAAAACTACTCACTAACAAAATGAAAGACGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTCACAAATGGAGTTG
AACCAAGTAACATTGCAAAGGCATAATGATAGTAGGGTCGGGATATCCCCGCCCTCCGAACCGGACGTGAGGGTCTCCCCTCATCCGGCTCTCTGCAGGG
GAATCTCCACTCACTGCTTCCCCTAATATCCTCCCTTTACCACATCATGGGGGTTTACAGGAGATCCCAGAGACTCGCTCGGAAAGGCTGCTATACCAAA
CATTATTACTTAACTACAAAGAAAGAAAAGACTATAGTAGTCACTAGACTGACTATAGTAGTCCGTCCGGCTGCTCTTGCTTAAATCATTACTCTTCATT
CTCCCGTGCTCTAGCAATTGCGCTCCCTAGACCACTACCATTTAGTTAGGTAGGGACAATCAATCCATAGTTACGGGAATAACGGAATGCATGGGGATCC
AAAAAAATAGAAAAATGCATATTTTCTATGAAATCCTTTCTTTCCATAGATGTATCTGGTCTGAGACGGTACAGTACTCTATGAGAGGAATGCAATGGGA
TGGATGGTAGAGGGCTGCCTGCGCCCAAAAGCGATGATTCACTTGTCCCCTTGTCTATAGGGACCTTGTGGCATACAACCGCCACGACTCCTGCGTTATA
GCCGCCCCTTTCTCTCTTTCTTTTGACTGCCTCGTGGACGGACGAAAGAAGGGAAGTTACAGAAGGGGGCAGTGAAGGCTCGCCAAGTAGACAGCAAGCC
CCCACCCCGTCAGTCCTGTGTTGCCGTAGCGTGCCCTACTTCAATAAGGTATTACCTCGCCGATTTGAAAGGGGATGGGATTCATTCACTTGCATTCCTG
CTAGCACTACAAAAAGCTCCGGTCTTAACGACCCTACGGAAGCTGTGCAGCCTTTCCTCGGGTTCGTAGAGTCGGGTTTCCCGTTTACCCACAACGGAGG
AGCCGCCCCCACCAACCAAAGCAGGTAGGCGGCCACGGTTCATAACGCACTCTTCGCACAACAGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATC
GTCGGAATGTGTACGAGATACCATAAGGGCCCAATATCTCAATAGCACCCTTGTCTAAAGCTTCGAATGAGACTGAATATCCGAAACGCAGGAACGATCT
GACTAGAAAGTCATTCAAAACTTGATCGAAGAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACAAAAAGTACTAGTTTGAAAGGCTCGTTGGAAT
TGATCCGCTACGAGATTGACATTATACGCTAGAGAAGCACCTGAAGTACTAAACAGAATAGGTATTAGTTTTGTAATGGTTGGAGCAGCAAACTCGGATT
CGGCAAGAATCTCATTTTTTGGTAGTACGAAGGGGGAATTGGCCCAAAAATTGGATAGGGGTAAAGACGCAGCCGGGTGCCGGCGGCTTATTCAAGTGCC
CCCCGAACCGCGCGAAATGGTCGCCTATTACACGGCTCACAAACTCTGCCTGGGGTGGGGCTACCTATTATTCGTAGGCGGTACGTACGGCGCACGCAGG
GCCTCGGTTTGCTGCGTGGACTGTCTATGCATTTCCTACAGAGTGTAATGGAACCCAGCTCAGCTCCGCCGAGCCAAAAGGAAAGAAAAGAACAGAACAG
CCGGAGGCGAAGAGTAGAGTATAGCCAAGGGGCTTTCGTCGTCCGTAAAGGACCTAACGGAAGACCGTGCTCCGAAGTGCACTGAGAGTTTAGTTTTAAT
AACACTTGGCCTTACCCCTTCGTTTTGAGCCATGTCTAGGTAGAATCGGCAAGATTGAACCGAGGCCCGCCCGGGCACCGCCGGGGGGACAACCAGACCA
ACCAGTAGGCTTTCTTTCCGAAGTTTCCTCCCGGGGCCCTTAAATCATTGAATTCATAGGCATAGGGGCGTCCCAGGCAGTGGTTCATTCAATGAGAAAG
AAAGACAGGAGGGCAGGATTCGTCGTGTCGGGCGAATTCATTCTGGGAAAAAAGGGGGATTTTGAGTGAGCTATGCGAAGGGAAGGGAAAGGGAGTCGTG
GGCTGAGCCGGAGGTCACTTTTCCCGATCCATCCCGAAGGTTTTTTTCCCTCTCTCGCCCCATCATCGTACCCAGTCCTGCTATCGGCTCAGCCCTATCT
ATTCATCTCTTTTTTTTACATGGATATTTTTTTTCTCTCTTGTTCATAGATCTTGAAAGCGGATCAATAGAAATTTCTCAAAGGATCTATCTATAGAAAG
ATCTAGATCTCTATCATCATCTATCTCTATATCTAAATATGGAAGAACCCTCGAAGCCTGTCCCCGACGACGATGCCCCCTGGGCGAAAGGAAAGGGGCC
GCCATTCTCTTTCTTTCCTCAATCGTTCCGATCATTTCTCTCATTCCCTTTTGTTTGTTTGGGGCCCCGGGTTGGTTCGTTTCCTCCTCCTATCTACGCA
ATTCTCTGTCTTCG