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Detailed information on CNT30467405


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 1e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30182368Saccharum spontaneumSecale cereale84.7667.7597.741374forward
CNT30299594Saccharum spontaneumTriticum aestivum41.6489.2999.56675forward
CNT30385170Saccharum spontaneumTriticum turgidum84.7697.6597.231374forward
CNT30437984Saccharum spontaneumAegilops tauschii22.3395.7799.17362forward
CNT30210175Saccharum spontaneumHelianthus annuus22.5897.3492.9366forward
CNT30427311Saccharum spontaneumPapaver somniferum40.9618.0393.67664forward
CNT3056795Saccharum spontaneumAmborella trichopoda25.7278.3892.33417forward
CNT30115468Saccharum spontaneumOryza nivara84.9539.8997.11377forward

Expression of CNT30467405

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKDDLESTQEDRESHIREKVTNGVEPSNIAKA*

>peptide 2 (34 aa)
MIVGSTLKLTYSLGQSSECVRDTIRAQYLNSTLV*

>peptide 3 (41 aa)
MELNQVTLQRHNDSRIHFEVDLFARPIVGMCTRYHKGPISQ*

>peptide 4 (52 aa)
MHFLQSVMEPSSAPPSQKERKEQNSRRRRVEYSQGAFVVRKGPNGRPCSEVH*

>peptide 5 (58 aa)
MRREGKGSRGLSRRSLFPIHPEGFFPSLAPSSYPVLLSAQPYLFISFFYMDIFFLSCS*

>peptide 6 (60 aa)
LASGTTGLMKPIMLDNQILLPSYLSTSLRQKISKVCICLHVPPSMLPLPRKGDYTYSIKN*

>peptide 7 (90 aa)
MVGAANSDSARISFFGSTKGELAQKLDRGKDAAGCRRLIQVPPEPREMVAYYTAHKLCLGWGYLLFVGGTYGARRASVCCVDCLCISYRV*

Sequence

>CNT30467405
TCTAGCTTCTGGCACAACTGGACTTATGAAACCGATCATGCTGGACAATCAAATACTTCTTCCCTCATACTTATCTACTTCGCTTAGGCAAAAGATTTCA
AAAGTCTGTATCTGTCTACATGTGCCTCCGTCTATGTTACCCCTTCCCCGGAAAGGTGATTATACGTATAGTATAAAAAACTAGAATAAAAAAGAAAGAA
GAGAAAGAACTGGGAGTTGGCGCCTACATAACAGGTAGCTTGCTTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCTCTTATTATTCTTGACTTGACTTA
TTAATAAGAAAACTACTCACTAACAAAATGAAAGACGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTCACAAATGGAGTTG
AACCAAGTAACATTGCAAAGGCATAATGATAGTAGGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGGAATGTGTACGAGATACCATAAGG
GCCCAATATCTCAATAGCACCCTTGTCTAAAGCTTCGAATGAGACTGAATATCCGAAACGCAGGAACGATCTGACTAGAAAGTCATTCAAAACTTGATCG
AAGAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACAAAAAGTACTAGTTTGAAAGGCTCGTTGGAATTGATCCGCTACGAGATTGACATTATACG
CTAGAGAAGCACCTGAAGTACTAAACAGAATAGGTATTAGTTTTGTAATGGTTGGAGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGTAGTAC
GAAGGGGGAATTGGCCCAAAAATTGGATAGGGGTAAAGACGCAGCCGGGTGCCGGCGGCTTATTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTAT
TACACGGCTCACAAACTCTGCCTGGGGTGGGGCTACCTATTATTCGTAGGCGGTACGTACGGCGCACGCAGGGCCTCGGTTTGCTGCGTGGACTGTCTAT
GCATTTCCTACAGAGTGTAATGGAACCCAGCTCAGCTCCGCCGAGCCAAAAGGAAAGAAAAGAACAGAACAGCCGGAGGCGAAGAGTAGAGTATAGCCAA
GGGGCTTTCGTCGTCCGTAAAGGACCTAACGGAAGACCGTGCTCCGAAGTGCACTGAGAGTTTAGTTTTAATAACACTTGGCCTTACCCCTTCGTTTTGA
GCCATGTCTAGGTAGAATCGGCAAGATTGAACCGAGGCCCGCCCGGGCACCGCCGGGGGGACAACCAGACCAACCAGTAGGCTTTCTTTCCGAAGTTTCC
TCCCGGGGCCCTTAAATCATTGAATTCATAGGCATAGGGGCGTCCCAGGCAGTGGTTCATTCAATGAGAAAGAAAGACAGGAGGGCAGGATTCGTCGTGT
CGGGCGAATTCATTCTGGGAAAAAAGGGGGATTTTGAGTGAGCTATGCGAAGGGAAGGGAAAGGGAGTCGTGGGCTGAGCCGGAGGTCACTTTTCCCGAT
CCATCCCGAAGGTTTTTTTCCCTCTCTCGCCCCATCATCGTACCCAGTCCTGCTATCGGCTCAGCCCTATCTATTCATCTCTTTTTTTTACATGGATATT
TTTTTTCTCTCTTGTTCATAG