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Detailed information on CNT30467363


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QXJ2|GL122_ORYSJ, E-value = 3e-111

BLAST vs NONCODE:
NONORUT002037, E-value = 5e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30140763Saccharum spontaneumLolium perenne36.7190.7180.71254forward

Expression of CNT30467363

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPKHDLFSCGCSPRTELEANQLSPFAPGRPWPRHHLRSVASIQKLRSQ*

>peptide 2 (58 aa)
MRAIEMPRVLSPGNCMTLIKVTLDPTLLFMVSLGWSSFAALKKSSPFTAMGSLQTNPFT

>peptide 3 (32 aa)
MSPSGNTNTSPFLRTLVNSLLPLSVLEVTNPT*

>peptide 4 (32 aa)
MIYLVVVVLPELSLKPINCPLLHLEGLGQDII*

Sequence

>CNT30467363
ATTTATTTTATTATCAGTAGTAGCATAGAAATAATAAATACATACAGTAGTATGTGAAGTGCAAATAAAGCTCTACATTCCCATACAAATTATTTCAGAA
CTCATACAATGCCCAAACATGATTTATTTAGTTGTGGTTGTTCTCCCAGAACTGAGCTTGAAGCCAATCAATTGTCCCCTTTTGCACCTGGAAGGCCTTG
GCCAAGACATCATCTGAGATCGGTGGCTTCGATCCAAAAACTGCGTTCGCAATAGTAATAGCCCCAGGGTTCTGGCTGCTTAGTGCAGCGATTGCGACAG
CTGGCTTGTCATGGATCGGGTTGAACTGGAAGTGTATGAGCCCTTCGGGGAATACAAACACGTCACCCTTCTTGAGAACCTTGGTAAATAGCTTGTTACC
GTTGTCTGTGTTAGAGGTGACAAATCCAACATAGAGTGTACCCTCAAGCACAGTGAGAATCTCTGTGGCACGTGGGTGGGTGTGTGGTGGATTCTGACCT
AACGGTGCATAGTCAATGCGAGCCATCGAGATGCCCAGGGTGTTGAGTCCAGGCAACTGCATGACATTGATCAAAGTAACGTTAGATCCGACCTTGCTCT
TCATGGTGTCCCTAGGCTGGTCAAGTTTTGCTGCCTTGAAGAAGTCATCTCCGTTCACCGCCATGGGGTCCTTGCAAACAAATCCATTCACC