Detailed information on CNT30467292


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523300Saccharum spontaneumSetaria italica7.8229.6783.87124reverse complement

Expression of CNT30467292

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MDRAARLCSVAAQTHQLFMDPTAAVTPALLQFLPPKSEEEKSCSGSSPSSSVVFDAAAPPVGLGLDL

>peptide 2 (57 aa)
FRRKMLQHSRQCRVSRRSEIARHLRRPGVPTRAPLAILARAPSPFFRMGIRAWQWHG*

>peptide 3 (93 aa)
SEKNAPTFPAMQSQSAIRNRSSSAAPRRPHARAPRHSSASTLSLFPHGHQGMAMAWMMDLPHSSRVELPRPPTATCATRPTKPLPPSLNTINA*

>peptide 4 (52 aa)
MAAPCGVAQDTTALLRRPCVVYWLLRHWLWAPNSSAHASPSRLRFLKAARIR*

>peptide 5 (55 aa)
MEAQPHRHKSIVLPIYSYIITIDYYSFPTLHTTSAGGGRLRSSPRPSTDGDDDPE*

>peptide 6 (36 aa)
MDDGSASLFPRRAASAAHRYVRHAANQTTAPQPEHN*

>peptide 7 (37 aa)
FGEKCSNIPGNAESVGDQKSLVICGAPASPRARPSPF*

Sequence

>CNT30467292
TTTCGGAGAAAAATGCTCCAACATTCCCGGCAATGCAGAGTCAGTCGGCGATCAGAAATCGCTCGTCATCTGCGGCGCCCCGGCGTCCCCACGCGCGCGC
CCCTCGCCATTCTAGCGCGAGCACCCTCTCCCTTTTTCCGCATGGGCATCAGGGCATGGCAATGGCATGGATGATGGATCTGCCTCACTCTTCCCGCGTC
GAGCTGCCTCGGCCGCCCACCGCTACGTGCGCCACGCGGCCAACCAAACCACTGCCCCCCAGCCTGAACACAATTAACGCGTGATCTTGGCTCTAGCCAG
TACGGCCACTCCGCCATCCATGGCTGCGCCGTGCGGAGTGGCACAGGATACCACGGCTCTCCTCCGCCGACCCTGCGTCGTCTACTGGCTTCTCCGACAC
TGGCTTTGGGCCCCAAACTCGTCAGCACACGCGTCACCTAGTAGGCTGCGATTTTTGAAAGCTGCGCGAATCAGATAGCAAATGTCGAGGATCATGTAAT
CGGTGGTCAATTCTGAACTTTATCGCGCAAGGAATTAGCAGCTAATTATGCTTGTGGAGTGTTGAATTGTGCAAGCTGAAGTTAGGATTTAGGAGAGATG
CCATGGCACTGCAATTTTGGTACGAGAGAAAATATTTGCTTGTTGATTAATTCTTGCATTGCGTAGTTGCAAATCGGCCAGTGCACAGGAAAAAAAATGG
AGGCGCAGCCACACAGACACAAATCAATTGTGCTTCCTATTTACTCGTACATTATTACTATTGACTACTACTCATTTCCGACGCTACATACCACCTCGGC
CGGCGGAGGCAGGTTGAGGTCGAGCCCCAGGCCGAGCACCGACGGCGACGACGACCCCGAGTAGCAGCTCCGCTCCTCCTCCCTCTTCATCGGCGCGAGG
TGCGCCAACGCCGGCATCGGGTCCAAGAACAGGTACGGCTGGGCGGCCACCATCGCCGGGAAGAGCCCGAGGCTCAGGTCGAGCGACGACGGCGGAGCCG
CCGGCGGCGCAGCGACCGCTACCGTCACTGCCAGCGGGTGGTCGCCGTCCCTGGACGAGGACGACGAGGAGGACGACTCGGTGCCGCAGCTCGCGCTCGC
GTCCGGAGCCGTGCACGGCGGCGCTGGGACGGCGACGGCGTCGGGGTAGCTGTAGTTGGTGGTGGCGCGCGGACCGCGGAGCCTGCGCGCGGCGGCGTCG
TAGGCCCGCGCGGCCTGCTCGGGCGTGTCGAAGGTGCCCCCAGCCACACGCGCGCCTTCCGCGCGGGGTCCCGGATCTCCGCCGCGTACCGGCCCCACGG
GCGCTTCCGCACCCCGCGGAGCCTCGGCTGCTCTCGCTCCTCCGCCGCCGCCGCGCGCTCCTCGCTGCTCCTCCTAGGTGCCATGGACCGAGCTGCCCGT
CTGTGCTCTGTAGCCGCGCAGACGCACCAGCTGTTCATGGACCCGACGGCGGCCGTGACGCCGGCGCTGCTGCAGTTCCTGCCGCCGAAGAGCGAGGAGG
AGAAGAGCTGCTCTGGGTCGTCGCCATCGTCGTCTGTGGTGTTCGACGCGGCGGCGCCGCCCGTGGGCCTGGGGCTGGACCTCAA