Detailed information on CNT30466778


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SBL4|CHS5_SORBI, E-value = 3e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524257Saccharum spontaneumSetaria italica44.2135.6988.89126forward
CNT30252573Saccharum spontaneumAvena sativa60.719.0784.39173forward
CNT30355235Saccharum spontaneumLactuca sativa2012.3487.7257forward

Expression of CNT30466778

Peptides detected in this lncRNA

>peptide 1 (78 aa)
GDAVEHDGLDGEPGAEAEEDAPVEAFACGGLPVLGRALAHLVEDKEHAGAGHVAVLGENMSRRAHPLLVQPDLGLHLV*

>peptide 2 (93 aa)
GTLWSTTVSTVSPGPKPKRTPQSKPSPVVACPSSAERLRISSRIKSTQALDMLPYSERTCRVARIRSLSSPTLASTWSRMAGPPGCATQKMEL*

Sequence

>CNT30466778
GGGGACGCTGTGGAGCACGACGGTCTCGACGGTGAGCCCGGGGCCGAAGCCGAAGAGGACGCCCCAGTCGAAGCCTTCGCCTGTGGTGGCCTGCCCGTCC
TCGGCCGAGCGCTTGCGCATCTCGTCGAGGATAAAGAGCACGCAGGCGCTGGACATGTTGCCGTACTCGGAGAGAACATGTCGCGTCGCGCGCATCCGCT
CCTTGTCCAGCCCGACCTTGGCCTCCACCTGGTCTAGGATGGCCGGCCCACCGGGGTGCGCCACCCAGAAGATGGAGTTGTAGTC