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Detailed information on CNT30466645


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SBL7|CHS2_SORBI, E-value = 8e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3022840Saccharum spontaneumPopulus trichocarpa30.369.4584.7892forward

Expression of CNT30466645

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MPSGLNASSSARSMFLEMSPGTSLSRWNVSPTSRRWPSMAPSESGRMVCAADTSWNSGLSTRSSGS

>peptide 2 (39 aa)
SRASAPFPARPWPPPGPGWRGHPGAPPRRWSCSLRCPAA*

>peptide 3 (33 aa)
RAHPLLFQPDLGLHLVQDGGATRVRHPEDGVVV*

>peptide 4 (32 aa)
VARIRSFSSPTLASTWSRMAGPPGCATQKMEL*

Sequence

>CNT30466645
GTCGCGCGCATCCGCTCCTTTTCCAGCCCGACCTTGGCCTCCACCTGGTCCAGGATGGCGGGGCCACCCGGGTGCGCCACCCAGAAGATGGAGTTGTAGT
CTGAGATGCCCAGCGGCTTGAACGCCTCCTCCAGCGCGCGCTCGATGTTCTTGGAGATGAGCCCGGGGACGTCCTTGAGCAGGTGGAACGTGAGCCCGAC
CTCGCGGAGGTGGCCGTCGATGGCGCCCTCGGAGTCCGGCAGGATGGTCTGCGCCGCCGACACGAGCTGGAACAGTGGCCTCTCCACGCGCTCGTCAGGG
TCG