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Detailed information on CNT30466546


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XGX1|CHS7_SORBI, E-value = 7e-57

BLAST vs NONCODE:
NONPOPT000627, E-value = 1e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628476Saccharum spontaneumVigna unguiculata85.3430.0782.38227forward
CNT3045136Saccharum spontaneumPrunus dulcis51.8822.1984.06138forward
CNT30192407Saccharum spontaneumSecale cereale98.539.2288.17262forward
CNT30564019Saccharum spontaneumActinidia chinensis76.6927.5381.86204forward
CNT3088050Saccharum spontaneumVigna radiata98.1251.9981.99261forward
CNT30252036Saccharum spontaneumAvena sativa78.5713.0784.21209forward
CNT30610101Saccharum spontaneumGossypium raimondii78.958.0682.38210forward
CNT30647274Saccharum spontaneumRosa chinensis78.9512.0880.95210forward
CNT30680228Saccharum spontaneumTriticum urartu45.1125.4290120forward
CNT30365392Saccharum spontaneumSorghum bicolor99.6245.6996.98265forward
CNT30355776Saccharum spontaneumLactuca sativa76.6935.1782.84204forward
CNT30151821Saccharum spontaneumPrunus persica78.9536.4680.95210forward
CNT30705527Saccharum spontaneumPrunus avium51.8829.8181.88138forward
CNT30103826Saccharum spontaneumOryza rufipogon48.8718.8190.77130forward
CNT30114123Saccharum spontaneumFicus carica78.9513.0780.48210forward

Expression of CNT30466546

Peptides detected in this lncRNA

>peptide 1 (87 aa)
VVLGEVLGHAQHRAAREAPLLVHHQAVHGRAQAQHLGQLVVGARHVDAGGGAEDEVGDLGFRLPPLLDRLLRRGLAQLGDLHHHDVLA

>peptide 2 (39 aa)
LFSARSLATRSTVPPAKHPCWYIIRRFTDGRRPSILVSW*

>peptide 3 (43 aa)
MSTPEVVQKTRWVILDFGCPHSLIAFCAAALPSLGTSTTTMSWR

>peptide 4 (57 aa)
GCSRRGPWPRAAPCRPRSTPAGTSSGGSRTGAGPASWSAGSRRPACRRRRWCRRRGG*

Sequence

>CNT30466546
GGTTGTTCTCGGCGAGGTCCTTGGCCACGCGCAGCACCGTGCCGCCCGCGAAGCACCCCTGCTGGTACATCATCAGGCGGTTCACGGACGGGCGCAGGCC
CAGCATCTTGGTCAGCTGGTAGTCGGCGCCCGGCATGTCGACGCCGGAGGTGGTGCAGAAGACGAGGTGGGTGATCTTGGATTTCGGCTGCCCCCACTCC
TTGATCGCCTTCTGCGCCGCGGCCTTGCCCAGCTTGGGGACCTCCACCACCACGATGTCCTGGCGC