Detailed information on CNT30466470


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 6e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712450Saccharum spontaneumGlycine max60.7596.4887.96274reverse complement
CNT30225509Saccharum spontaneumHordeum vulgare76.2767.9896.22344reverse complement
CNT30562726Saccharum spontaneumActinidia chinensis52.9960.288.7239reverse complement

Expression of CNT30466470

Peptides detected in this lncRNA

>peptide 1 (79 aa)
GAPLLLKLRGYFTEFLRESCLAPLGILYLPTCVGFGYRYPFVEGRSSFSWEYGMGLILQRCSAWYSDLGSMHFLYPFLP*

>peptide 2 (46 aa)
MAWGSYFSAAALGTRTSARCIFSTPSYPEKAGSPCVLQPITIFRLT*

Sequence

>CNT30466470
GGGGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTACCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTC
GGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGGCATGGGGCTCATACTTCAGCGCTGCAGCGCTTGGTACTCGG
ACCTCGGCTCGATGCATTTTCTCTACCCCTTCTTACCCTGAAAAAGCAGGGTCACCTTGTGTCCTTCAACCTATAACCATCTTTCGGCTAACCTAGCCTC
CTTCGTCCCTCCGTACCAACAAGGGGTAGTACAGGAATATTGACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCG
TGGACGAACCTTGCGGAGGAAACCTTGGGTTTTCGGGGCATTGGATTCTCA