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Detailed information on CNT3046620


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 6e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709036Prunus dulcisGlycine max44.5542.6884.67274forward
CNT30173253Prunus dulcisTrifolium pratense35.2825.584.33217forward
CNT30146159Prunus dulcisMedicago truncatula37.8937.3484.12233forward
CNT30611387Prunus dulcisArabis alpina28.4663.8784175forward
CNT30204126Prunus dulcisHelianthus annuus19.3523.2488.24119forward

Expression of CNT3046620

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MACTKNPNIENMASLPFFSSFTFSSAKASGSSARPNGSKLPPGYNGSVISPRGPPATL*

>peptide 2 (30 aa)
NMSHSILILTNMYCLEYTIKSHRLGLLPNS*

Sequence

>CNT3046620
ATAATATGTCACATAGCATTTTAATCCTTACTAATATGTACTGTCTTGAGTATACTATTAAATCTCACAGATTGGGACTCTTACCAAACAGTTAGAAGTG
GATGAATATCAGTGAATTGAGAGCCAGGTGAACTTGTCAGCAAAACAACAAGTAGATTAAATGAGAAGCAATCTACAGAAAGGTGATAACTTATCCTTTC
AGATCTTGATGACCACTAGAATTACAGTCTAATCCAATTTCATCAACATAATTAAGCACAATTGCCAAAACCATTAGGAAAAAAGCACACTTCTCTCTCA
ATCTCAGGCTCACTTGCCGGGAACAAAGTTTGTGGCGTATGCCCATGCATTATTGTTAACAGGGTCAGCCAAGTGGTCAGCTAAGTTCTCAATTGGTCCC
TTCCCTGTAACAATGGCCTGCACAAAGAACCCAAACATAGAAAACATGGCCAGTCTTCCATTCTTTAGCTCCTTCACCTTCAGCTCAGCAAAAGCTTCTG
GATCTTCTGCAAGGCCTAATGGGTCAAAGCTCCCACCTGGATATAATGGGTCAGTGATCTCTCCGAGAGGCCCACCTGCAACTCTGTAACCTTCCACTGA
TAACTTGTGTGGCTC