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Detailed information on CNT30466191


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180942Saccharum spontaneumSecale cereale23.5517.2192.02163forward
CNT30385545Saccharum spontaneumTriticum turgidum23.5516.6792.02163forward
CNT30240769Saccharum spontaneumAvena sativa23.5520.8488.34163forward
CNT3081457Saccharum spontaneumBrassica juncea8.0925.9387.556forward
CNT30601253Saccharum spontaneumFraxinus excelsior6.652091.346forward
CNT30132778Saccharum spontaneumLolium perenne23.8420.7589.09165forward
CNT3017302Saccharum spontaneumZea mays62.1460.2291.16430forward
CNT3067371Saccharum spontaneumLeersia perrieri28.7626.4689.95199forward
CNT30596127Saccharum spontaneumOryza meridionalis28.7630.8589.45199forward
CNT30107264Saccharum spontaneumOryza longistaminata28.7626.3689.45199forward
CNT30603959Saccharum spontaneumOryza punctata28.7626.0589.45199forward

Expression of CNT30466191

Peptides detected in this lncRNA

>peptide 1 (40 aa)
KRSPSDLLVLNPHSHCIRQAPLLSDLDEASCGAGRRGGGG*

>peptide 2 (88 aa)
REVRPTCLSSILIVIASDRRRSFRIWTRRAAAPGVAEEEDELDRAQDPPLQCHHRPLHARLVGALPLQYFDGLPLLVHSSLSPWVLPK*

>peptide 3 (66 aa)
MNWIGRKIHLYNVTIGLYMLDWWERYLFNILMVCLFWYILRYLLGFFQSNLKTLFQEGNYLGQGST*

Sequence

>CNT30466191
AAGAGAAGTCCGTCCGACTTGCTTGTCCTCAATCCTCATAGTCATTGCATCAGACAGGCGCCGCTCCTTTCGGATCTGGACGAGGCGAGCTGCGGCGCCG
GGCGTCGCGGAGGAGGAGGATGAACTGGATCGGGCGCAAGATCCACCTCTACAATGTCACCATCGGCCTCTACATGCTCGATTGGTGGGAGCGCTACCTC
TTCAATATTTTGATGGTTTGCCTCTTTTGGTACATTCTTCGCTATCTCCTTGGGTTCTTCCAAAGTAATCTGAAGACTCTTTTTCAAGAGGGGAACTATC
TTGGGCAAGGCAGTACATAACCATTGTCAAACAGGATCTGCTTATGATCATATGCCCATGTAATTTCATCTGTTTAATTAGTTAACTGAGCAACAGAAAG
AACTAATTTGAACAAGCGTTACCGTGTAGCCATGCTCTGTATCTTCCCTGGAAGCTAATAGTCTCTAGTGTTTCTTTAATGGAGGAGGAAAAAAAACTTT
ATGTTGTGCAAGATTTGACTTTTTGTTAGTTGTTGCCTTGCTGGCCTGCCGAGTTTACCGGAGAAACCACAACTCTGTTATTCTGTTGTGTTCTGCATTA
GTACCACATCCACTCTGCCCTGTATTGGTACGACATGTATCGTCTGTTCAATTCATCACCGAAGTACAAAATCAGTAACCTGTGATATCCGA