« Back to Saccharum spontaneum search


Detailed information on CNT30465762


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0JBZ8|HCT1_ORYSJ, E-value = 5e-139

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692993Saccharum spontaneumOryza sativa52.539.8682.74336forward
CNT30676466Saccharum spontaneumSetaria viridis41.8852.8689.18268forward
CNT30553387Saccharum spontaneumOryza glaberrima57.0340.8385.75365forward
CNT30595781Saccharum spontaneumOryza meridionalis27.536.3681.82176forward
CNT30370065Saccharum spontaneumOryza glumipatula52.539.6283.04336forward
CNT30101295Saccharum spontaneumOryza rufipogon50.7852.9382.77325forward
CNT30576181Saccharum spontaneumOryza barthii52.544.4482.74336forward
CNT30115964Saccharum spontaneumOryza nivara27.518.6881.82176forward
CNT30550530Saccharum spontaneumOryza brachyantha22.6620.0882.76145forward

Expression of CNT30465762

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MCSACKEIAMDRLPSPFALGRTNARPSYAMPPGPMNTGRPHPKSASWIGRRTQLVSPRFGHRKVCAPRTSADKSGCSSR*

Sequence

>CNT30465762
GGCGCTGACATTCCGTTTAAACTTCGCAGATTAGCTTCCGGAACTTCTCCATGTGCTCGGCCTGCAAAGAGATAGCAATGGACAGGCTGCCGTCTCCATT
TGCACTTGGGAGGACAAACGCCAGACCTTCATATGCAATGCCGCCTGGCCCCATGAACACGGGCCGGCCCCATCCGAAGTCGGCATCATGGATAGGAAGA
CGCACCCAGCTGGTAAGCCCTAGGTTTGGGCACCGGAAGGTATGCGCTCCGCGCACCAGTGCTGACAAATCCGGTTGCAGCTCCAGGTAGTCCAGCGCTG
AGCGGCAGTAGTCATTGTCCATCCTATCCAGTGCTCCCTGGATGACTGCTGCTCCTTCTGCCAGCCCACTGGTCACCTTGCCCGCCTCAGCAAGTGGTGT
CACAGTGAAGATGACATTGCCAAAGTAACCATTTGGTAGTGGAGGCTGTAGCCGTTGTCGCCCATCAGTGGCGCAATACAACTTGGTGGGTTGTTCAGGA
GGTAGGCTGCGTGCAAGGGAGACACATTTCCAGACATGTGCCGCTAGCACTGCATATGTGCTGAACCGGGGTGCACCTTCCCCTGCAGGAAGCTGTGAGC
GCAGCCGGCCAAGGTCTGAGCGAGTGAGCTTGAAAATGTC