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Detailed information on CNT30465661


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XSQ9|PIP12_ORYSJ, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523825Saccharum spontaneumSetaria italica62.2185.4489.63270forward
CNT30221132Saccharum spontaneumHordeum vulgare49.0892.2187.32213forward
CNT30552571Saccharum spontaneumOryza glaberrima12.922.1391.0756forward
CNT30254684Saccharum spontaneumAvena sativa12.924.8991.0756forward
CNT30653715Saccharum spontaneumRosa chinensis26.7319.981.03116forward
CNT30575194Saccharum spontaneumOryza barthii14.9831.7195.3865forward

Expression of CNT30465661

Peptides detected in this lncRNA

>peptide 1 (95 aa)
HMGVPGVPLGVGGGEDGVDEDEDVEEEEGGDELGDARAVEGPRLELPGLEERRRRGLLVVLVVGALRRRADGLALRELVGAQAHVLLLPFHVAGY*

>peptide 2 (35 aa)
MGWRSENLLAPRRTSSSFPSMSPAISSLLAAAEPG*

Sequence

>CNT30465661
CACATGGGAGTCCCTGGCGTTCCTCTTGGCGTCGGTGGCGGAGAAGACGGTGTAGACGAGGATGAAGATGTAGAGGAAGAGGAAGGTGGCGACGAACTCG
GCGATGCCCGCGCGGTAGAAGGACCACGACTTGAGCTCCCCGGGCTCGAAGAGCGGCGCCGGCGGGGGCTCCTTGTAGTCCTTGTCGTCGGTGCCCTGCG
CCGCCGTGCCGATGGGCTGGCGCTCCGAGAACTTGTTGGCGCCCAGGCGCACGTCCTCCTCCTTCCCTTCCATGTCGCCGGCTATTAGCTCGCTCCTTGC
AGCAGCCGAGCCTGGCTAGCTAGAGCTAGAAGAAGAAGCTAGTTGCTGAGCTGAGCTGAGGTGGTGTGGTGCTTGTGTCGCAGCGGGGAGTGAAGAGTCT
TATAGTGAGCAGCAGCATCAATGGTGGCGAGGAG