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Detailed information on CNT3046546


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 9e-44

BLAST vs NONCODE:
NONMEST003434, E-value = 2e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702960Prunus dulcisQuercus lobata13.0733.2583.69141forward
CNT30154314Prunus dulcisPrunus persica8.6234.798.9293forward
CNT30707566Prunus dulcisPrunus avium49.8626.2298.7538forward

Expression of CNT3046546

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MEKSLHIADSLSYELITMTEENLCKCKKFIAEAPDNTKLGLKG*

>peptide 2 (43 aa)
MPLPHSPVELCGFGGSTNLLHWDGFWAEEFQGARVLVLILVLQ*

>peptide 3 (47 aa)
MRSPVYSTLHQLIPIHFSIQFSTKPLKEMISLACSGQNRQRHEPLGA*

Sequence

>CNT3046546
CAATTAACACTAATAAAAGGAACTGTTTAATTACACTATAACGAGAAATCTCCATAGTCATGCAAGGATAAAAAATTACCAGCAGACCAAAAATGGAGAA
ATCATTACATATTGCAGACTCATTATCCTATGAACTAATAACTATGACTGAGGAAAACCTCTGCAAATGTAAAAAATTCATTGCAGAAGCACCTGACAAC
ACCAAACTGGGCCTAAAAGGCTAAAACCCAAACTAGACACAAACTAAGGTTAAAGCGAGAAATAAGCAAAGATTACATTATCATAAGGACTTTATATAGC
AGACCAGTCAATCTCCACTGAAGGGTACTTCTCTAGTCCGAAATTCTCAGCCTCATCCCATTGAGAATCCGAAAATTCCAAGAAGGTAATGTCGGATTCC
GGCGAAGAGGACCCGGCTGAAGACTCAACGGACCGAGAGGGCGAAGATGAGATCTCCGGTCTATAGCACTCTACACCAGTTAATTCCCATTCACTTTTCA
ATTCAGTTTTCAACGAAACCTCTGAAGGAGATGATATCGCTGGCTTGTAGTGGCCAAAATCGCCAGAGACATGAGCCCCTTGGTGCTTGAGATGAGGGAA
ATTGAGCCGAGCAAAGTCTCCCCTGAGCTTATAAGCAGCTTTATCATAAGCTAAAGCCGCTTCTTCAGCAGTGTCAAAGGTACCAAGCCATAGGCGGGTT
CGGTTCTTGGGAAGTCTAATCTCAGCAACCCATTTGCCCCAATGCCTCTGCCTCACTCCCCTGTAGAGCTTTGTGGGTTTGGAGGGAGCACCAACTTGCT
TCATTGGGATGGCTTTTGGGCTGAGGAATTTCAGGGTGCGAGGGTTTTGGTGCTGATATTGGTTTTGCAGTGAAGCTGGAGAAGCAAAAGCAGCAATTTG
TTCCTTTTGTTGGTGTTCCTGCTGTTGCTGGAGGACCATTTGGGTTTGGATTTGAAGAATTTGAGATGGGGTAAGTTGGTTAAGCCCTATTGAACCTGTT
TGCTCAAAACCCACTTGATCAAACATGTGGGTTGTGGATGGCGAGCAAAAGTCAGGGTACAAATTGGGCTGAGTAGAGT