Detailed information on CNT30465446


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SCZ4|FERON_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531695Saccharum spontaneumEucalyptus grandis5.9562.3884.13126forward
CNT30292814Saccharum spontaneumTriticum aestivum10.5762.7583.04224forward
CNT30588329Saccharum spontaneumMusa acuminata26.8554.8779.79569forward
CNT30436897Saccharum spontaneumAegilops tauschii5.9924.5283.46127forward
CNT30350229Saccharum spontaneumEragrostis tef55.9775.9885.51186forward
CNT30365831Saccharum spontaneumSorghum bicolor16.6653.7394.05353forward
CNT30101665Saccharum spontaneumOryza rufipogon5.3847.984.21114forward
CNT30175012Saccharum spontaneumVigna angularis12.7971.6978.23271forward

Expression of CNT30465446

Peptides detected in this lncRNA

>peptide 1 (37 aa)
ENTGFNFEPSLSPNSFTSKGDYNQGNQRVTPYFHIYM*

>peptide 2 (29 aa)
LKIQVSILNLLCLPIHLLVKEITIKEIKE*

>peptide 3 (58 aa)
MKHWGEIFPCRCGSMIWPRMPFFWQCSAQSARLTCSFGSEGLRAGRAQRTSNITTPNE*

>peptide 4 (43 aa)
MTSGDVFEDVPSVTLLLSSALSCSWSANSRFQRTSAIDGLSML*

>peptide 5 (46 aa)
MWVDDLAKDAFLLAVQRPVGKAHLLLWKRGAQSRACTEDLKHHDSK*

>peptide 6 (47 aa)
MLRTSVQVMQSPSRTDAYLKPLLPGQCWLLGVVQVLPKSPIGHVIIH*

>peptide 7 (56 aa)
MMHTPIKAMSSAAKPPTAPPMIAGTGTESLFLPLGFPLLGSKDGRGGLSPLRLLFP*

Sequence

>CNT30465446
CTGAAAATACAGGTTTCAATTTTGAACCTTCTCTGTCTCCCAATTCATTTACTAGTAAAGGAGATTACAATCAAGGAAATCAAAGAGTGACACCTTACTT
TCATATATATATGTGAATATTACAAATCGGCCTTGAAGTGAGAACATACCTCAGGTACATGTTTACGATAATTTAAAGGGAAGTACCTAGCCATTGCAGT
GATTTCTGCAGGCTCTGGCACAATACATACATATAGGGTGAACTAATTCCTTTTAAGATGAAGGAGCTATATGCTGGATATGTATAGAGATAACTATACT
AGTAGGTCATATATATACCAAGAAACTAGAAACATAAAGCAAATCAGAAGAGATTAACTGCAGTTCTATTTTCGGTTTTCATCTGCCACCTGGATGCATC
AGCTGCGAGAACACAACGCTTGGGGTCAGACCATCTGAATCCACACTTGCGAGGCTCCGTCCTGCCATGCTCATAGTCGATGATGATGTGGTAGTGGTTG
TGTCCGTCAGTGGTTCATCCGAGTGAAGCCTGGGGATGACAAGTGGCGATGTGTTTGAAGATGTCCCGTCAGTGACGCTGCTACTGTCCTCCGCGCTCTC
CTGCAGCTGGAGTGCAAATTCAAGGTTCCAGAGGACATCGGCCATAGATGGTCTGTCGATGCTGTGATCAGCCACACACTTCTCTGCAGTCTCCGCGAAC
TTCATGAAACATTGGGGAGAGATTTTCCCTTGCAGATGTGGGTCGATGATCTGGCCAAGGATGCCTTTCTTCTGGCAGTGCAGCGCCCAGTCGGCAAGGC
TCACTTGCTCCTTTGGAAGCGAGGGGCTCAGAGCAGGGCGTGCACAGAGGACCTCAAACATCACGACTCCAAATGAGTAGACATCAGATTTCTCAGTGAG
CTGCTGCCGTCGGAAGTACTCGGGGTCGAGGTATCCAAAGCTTCCCTTCACAACCGTGCTCACATGAGTGTTATCGACGTTCGGACCAGTCTTTGACAGC
CCAAAGTCTGAAACCTTAGCAACCAATTTGTCATCCAGCAAAATGTTGGTGGTCTTGACATCTCTGTGTATGATGGTATGCTTCGCACCAGTGTGCAGGT
AATGCAGTCCCCGAGCCGCACCGATGCATATCTCAAGCCGCTTCTTCCAGGACAGTGCTGGCTTCTTGGTGTTGTACAAGTGCTCCCTAAGAGTCCCATT
GGCCATGTAATCATACACTAGAATCATCTCATTCATATCATCACAATACCCAATCAGCGACACAAGGTGACGGTGTCGGAGCTTTGACAACATCTCAATC
TCAGTCTGGAACTCGTGGACACCCTGCTCAGACGTCGGGTTACCACGCTTGATTGCCACCATTGTGCCACTATCTATCTCTCCAAGGTACACATTTCCAA
AACCACCTTTGCCGAGGAGCGAGGTTTGATCAAAATTATTGGTGGCTGCCTGGATTTCACCAAATGAGAAGTGGCGGCAAAGATTAGATGGCAATGTTGA
CGTACGGCTCCCTGTAGTTGTTGTCTTCCCTGAGGTGTTTGACCGTGACTTGCTGTAATCAGTGAGAGGAGTCCACTGGCCATCATCGGGTTTCCCAGAT
TCCTTTGCTACCTTCTTTCTTCTGCAGATGATGCACACACCAATAAAGGCAATGAGTAGCGCAGCAAAACCACCAACAGCTCCACCAATGATTGCTGGCA
CCGGCACAGAATCTTTGTTTCTCCCACTAGGTTTCCCATTATTAGGTTCAAAAGATGGAAGGGGAGGGTTGAGCCCATTAAGACTATTGTTTCCATAATT
CTGCAGCTTGAAGACCTCCAGACCGTTCAATATTGCATCGAAGTACTCAGGTCTCGTCGTAAGATCTGGGTGGAGAGCAACCCATAACTCCGTCTGACCA
GAACCAGTTGTGATGGTAACATAGTCTGTGTACACTGTTTTGCCAATTCCTCCGCTAAACGCGATGACATCCATTTCCTGTTGTGCTGTCTGATTGTTGA
TGTAGATGAAGAATGACCTCTGATTGACCTTTGTTATCGGATACTGGATCTCACAGAAATGGAACCTTAGGAGGTAGTAGAACCCAGCATCAACGGGTAA
AATCCATGTAAGATTGTAG