Detailed information on CNT3046495


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3068994Prunus dulcisQuercus suber12.8723.2187.5104forward
CNT30144288Prunus dulcisMedicago truncatula32.4330.3280.92262forward
CNT3060266Prunus dulcisArabidopsis lyrata16.5823.7280.6134forward
CNT30133942Prunus dulcisLolium perenne13.2435.4382.24107forward
CNT30228403Prunus dulcisAnanas comosus12.1325.6582.6598forward
CNT30719439Prunus dulcisMalus domestica golden53.3462.7485.61431forward
CNT30705730Prunus dulcisPrunus avium32.9255.5397.74266forward
CNT3022274Prunus dulcisPopulus trichocarpa25.9943.1280.95210forward
CNT3035661Prunus dulcisCucumis melo25.7429.4686.06208forward

Expression of CNT3046495

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPRFSRTTFCNGCTSKIWLMEIIMVCSIQCPEN*

>peptide 2 (40 aa)
MLPPPSGLRGHKTQCTSVFWKNCAVSSSWVAMSPSFFNKPT

>peptide 3 (58 aa)
TTYHYKTCYEHPAIKNIYAGCHTDTLINLLSQIVVLKQKQRKKVFTLTKPSEKKTLFK*

>peptide 4 (32 aa)
PHTTIKPAMNILPLKTSMQVVTQIHLLIYYHK*

Sequence

>CNT3046495
ACCACATACCACTATAAAACCTGCTATGAACATCCTGCCATTAAAAACATCTATGCAGGTTGTCACACAGATACACTTATTAATCTACTATCACAAATAG
TAGTGTTAAAACAAAAACAACGTAAGAAAGTTTTTACTTTGACAAAACCAAGTGAAAAAAAGACACTTTTTAAGTAGTAAGGATCGGAGGAAGGTAGTCA
GACTTGGCACCTAGGACACGAGCCTTGGTGTCGGGGAAGAATTCACATCCTGGCAACTCGGTGACGGTTCCTTCGCTGGAAATGCCAATTGGATATCGGA
GCAAGTGACCAGGCAAGTCATGATTAAGAGATTCACTTGAATACAGATCCCAGTATTTGTCAGCAATCTGGTTCACCTTGGTAACACATTCAACGCTTTC
TGGCTGGAGGAACTTCTCGTCAAGCATGCCAAGGTTCTCTCGGACCACCTTTTGTAATGGATGCACCAGTAAAATTTGGCTGATGGAAATCATCATGGTG
TGCAGTATCCAATGTCCTGAAAATTGAATGGAAGGGGGTATCATATCTTCCATCACACAGATCAAGACCACCAACGAAACTCACAATTCTTCTCCTCTCT
GATCCTCCATTTGGCATGTCATTGTCCACAACCACAATCTTCTGGTGATGAGTGAACATGGTAGAGATTTGTGCACCCTGAACAATGCTTCCACCACCAT
CAGGATTACGAGGGCATAAGACACAGTGCACGTCAGTATTCTGGAAGAATTGTGCAGTTTCTTCATCGTGGGTTGCCATGAGTCCATCTTTTTTTAATAA
ACCAACGG