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Detailed information on CNT30464912


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547624Saccharum spontaneumIpomoea triloba9.7428.4283.9581forward
CNT30508427Saccharum spontaneumSolanum lycopersicum9.7423.3485.1981forward

Expression of CNT30464912

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MKTNLTLKSWAISLTSLWNGSFLMSSSVLF*

>peptide 2 (88 aa)
MLSSTKASIEQMHTILPEPFPITEKLSPLATDPPCQLNVLGHDGHALGVDGTRFVSSNRPTRYASAASCSARTACSGNADQSAQNTTG*

>peptide 3 (53 aa)
MSLGMMVTRLAWMAQGLCPRTDPPGMLPQPPAVQGPRALETQISLRKTQQGEK*

>peptide 4 (72 aa)
MFTSELRDYMTEHKRQYENKSHLEILGNFPDKPLEWKLPYEQLSALLILANFTAKSGIMIKNFVNMAHLFEV*

>peptide 5 (36 aa)
MQPLLTQYNEVHNLTYQFEVQITQGNTRHNITKFTT*

>peptide 6 (52 aa)
MNNIRVQTPTNVKLHKSKHRTDAHHTTRAIPNNRETKPSRHGSSLPAECPWA*

Sequence

>CNT30464912
CCATGCAACCATTGCTGACACAATATAACGAAGTTCACAACTTAACATATCAATTCGAGGTTCAGATAACCCAAGGCAATACCAGACACAATATAACGAA
GTTCACAACTTAACATATCAATTCGAGGTTCAGATAACCCATCAGGTTGATGGGCGAAACCAGCACTTAGACAAATAGAGTACTAATCGACAACAATTAT
AGATTCTAAAGACAGTACGATTGCAGTACTTCCTACCACTACGAATGAACAACATTAGAGTTCAAACACCCACAAATGTTAAGCTCCACAAAAGCAAGCA
TCGAACAGATGCACACCATACTACCAGAGCCATTCCCAATAACAGAGAAACTAAGCCCTCTCGCCACGGATCCTCCTTGCCAGCTGAATGTCCTTGGGCA
TGATGGTCACGCGCTTGGCGTGGATGGCACAAGGTTTGTGTCCTCGAACAGACCCACCAGGTATGCTTCCGCAGCCTCCTGCAGTGCAAGGACCGCGTGC
TCTGGAAACGCAGATCAGTCTGCGCAAAACACAACAGGGTGAGAAATAAGCTTCTATGTTTACTTCAGAATTGCGAGATTACATGACTGAGCACAAGAGA
CAGTATGAAAACAAATCTCACCTTGAAATCCTGGGCAATTTCCCTGACAAGCCTCTGGAATGGAAGCTTCCTTATGAGCAGCTCAGTGCTCTTCTGATAC
TTGCGAATTTCACTGCAAAGTCAGGGATAATGATTAAGAATTTTGTCAATATGGCACACTTATTTGAAGTGTGAACAGTAAACAATCAAAGAATTATTTA
TCGCGCACCGAAGAGCAACAGTTCCAGGGCGG