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Detailed information on CNT30464179


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Saccharum spontaneumOryza sativa26.6429.8293.85130forward
CNT30523795Saccharum spontaneumSetaria italica32.3825.5394.94158forward
CNT30698329Saccharum spontaneumQuercus lobata19.4720.1388.4295forward
CNT30495125Saccharum spontaneumOlea europaea14.9624.584.9373forward
CNT30591253Saccharum spontaneumMusa acuminata23.3636.5491.23114forward
CNT3084857Saccharum spontaneumVigna radiata23.989.5382.91117forward
CNT30435418Saccharum spontaneumAegilops tauschii27.4631.1694.78134forward
CNT30686633Saccharum spontaneumTriticum urartu19.2633.9496.8194reverse complement
CNT30719922Saccharum spontaneumTriticum spelta27.4622.6795.52134forward
CNT30329187Saccharum spontaneumDioscorea rotundata22.1327.8484.26108forward

Expression of CNT30464179

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MANTNTSRTLLHLQDKHGMKRTPPSTSRTATISSRTGAQALSPLMRRASWMSLGMMVTRLAWMAQRLVSSKSPTR*

>peptide 2 (46 aa)
GQHIQDRNGMKHTHLVLQRRASPTSRSTTTASSSTGRSSHSLISEL*

Sequence

>CNT30464179
AGGCCAACACATCCAGGATCGGAACGGCATGAAACACACACATCTAGTACTACAACGACGAGCATCACCTACTTCTAGAAGCACTACAACGGCGAGCAGC
AGCACGGGGCGCTCAAGCCATTCATTGATTTCAGAATTGTAGAACAGACGGCAAAATCTAACTAGAACAAGACCATTCACTAATTTCAGAAATGAGAATC
CACATTCCATTGCACTGAGGCCATGGCCAACACCAACACATCCAGAACACTACTACACCTACAGGATAAACACGGCATGAAACGAACTCCACCATCTACT
TCTCGTACCGCAACGATAAGCAGCAGGACGGGCGCTCAAGCCCTCTCGCCCCTGATGCGGCGCGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCT
TGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGCCCCACCAGGTAGGCCTCGGCAGCCTCCTGCAGCGCCGCCACCGCCGAGGA