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Detailed information on CNT30463998


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LK25|PHB4_ARATH, E-value = 7e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30132585Saccharum spontaneumLolium perenne9.5741.4997100forward
CNT30101155Saccharum spontaneumOryza rufipogon4.8823.0896.0851forward

Expression of CNT30463998

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MATSSRMMLNSRARRMSASRTRAETWGRSVSSWSALNWATTALSTSLPMEGSTLSSYSRKWVPSPTVSGSTPRNRSKMTARSPPSTV*

>peptide 2 (85 aa)
MYATFGERASSAAISLAASILLSSISPVPAIAVASEMRRADSLSPSARTMAARLSCSALATRNLERSASCCATCFFSTASENSIP*

>peptide 3 (39 aa)
STQYVTLTLRIVNMPTCPARPKTYLELKTNTFSSKTRET*

>peptide 4 (32 aa)
INSICHINPTNCKYAHLPSKTKNLFGAQDKHI*

>peptide 5 (31 aa)
MGALADGLREHPAEPVEDDGALAAVDGVERR*

Sequence

>CNT30463998
GATCAACTCAATATGTCACATTAACCCTACGAATTGTAAATATGCCCACTTGCCCAGCAAGACCAAAAACTTATTTGGAGCTCAAGACAAACACATTTAG
TTCCAAGACAAGGGAAACTTAACATAAGCAAGGGTAGCAGAAGATATCACTGTCCTTCGAACCACCGTTTTAGTCATGCATCAGCATAGCCAAGCAAACT
AAAACAAAACAGTGAATCACCGGCCAAATCCGGTAGCATTGAGACCAAGCAGCATCTTGCCGTTCTCCCCAGAAGGAATGTATGCCACATTCGGTGAGCG
AGCCAGCTCTGCGGCAATCTCCTTGGCCGCCTCGATCCTCCTGAGCTCGATCAGCCCTGTCCCAGCCATCGCCGTGGCCTCAGAGATGAGGCGCGCGGAC
TCGCTCTCTCCCTCAGCGCGCACGATGGCCGCCCGCCTCTCCTGCTCCGCCTTGGCGACGAGGAACTTGGAGCGCTCGGCCTCCTGCTGCGCGACCTGCT
TCTTCTCAACGGCCAGCGAGAACTCAATACCGTAGGAGAGGTGGGTGATGGCGACGTCGTCGAGGATGATGTTGAACTCGCGGGCGCGGCGGATGAGCGC
GTCGCGGACGAGGGCGGAGACGTGGGGGCGCTCGGTGAGCAGCTGGTCGGCGTTGAACTGGGCGACGACGGCCTTGAGCACCTCGTTGCCGATGGAGGGG
AGCACCTTGTCGTCGTACTCGAGGAAATGGGTGCCCTCGCCGACGGTCTCCGGGAGCACCCCGCGGAACCGGTCGAAGATGACGGCGCGCTCGCCGCCGT
CGACGGTGTAGAGCGACGCTGAGGCGAGGGAGGCCGCGGCTCCGAGCCCCGCAGCCGCCTTCGCGATGTTGGTCAGGAACGACACCGCCGCGGGACCGCC
GGCCATGGTTGTTTCGGGGTGATTTGCGGGCGCGGCGGCGCGGGGACGAAAACCCTAGAGAGGGGTGGGGGATTGTGTCTGGGGGCGGCGGCGGCGCTAT
GCGGATCTGAGCGTGGCGGGTTCTAGCGGGTTTTGCAGGGGTTTA