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Detailed information on CNT30463851


BLAST search results

BLAST vs Swiss-Prot:
sp|O65660|PLAT1_ARATH, E-value = 6e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524143Saccharum spontaneumSetaria italica34.2338.391.63203forward
CNT30549214Saccharum spontaneumIpomoea triloba42.1637.2680.4250forward
CNT30565935Saccharum spontaneumActinidia chinensis23.2728.487.68138forward
CNT30553468Saccharum spontaneumOryza glaberrima18.7222.3889.19111forward
CNT30441862Saccharum spontaneumAegilops tauschii33.0522.3586.73196forward
CNT30243815Saccharum spontaneumAvena sativa23.6146.9892.86140forward
CNT30228519Saccharum spontaneumAnanas comosus22.2617.1283.33132forward
CNT30365918Saccharum spontaneumSorghum bicolor8.621.4394.1251forward
CNT30596095Saccharum spontaneumOryza meridionalis14.8432.9693.1888forward
CNT30101442Saccharum spontaneumOryza rufipogon51.143.8588.45303forward
CNT30116476Saccharum spontaneumOryza nivara35.2432.6188.04209forward

Expression of CNT30463851

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSPPHAARSRIRIPVPSAPSSVTPIVESVPPFQMDPVRTYTVYTHCLPRRQRRRGEGR

>peptide 2 (63 aa)
RSRTSSLVQKQGSEITQRLHKMDVIRWDRSHNYIGAMVTVGSAPGSPSCRRFVLHLSTTAYRR*

Sequence

>CNT30463851
TACGTAGCAGAACCTCCTCGCTCGTACAAAAACAAGGCAGCGAAATCACACAGCGTCTCCACAAGATGGACGTAATCCGATGGGATCGGTCACATAATTA
CATAGGGGCAATGGTCACGGTGGGCTCGGCCCCGGGCTCGCCCTCCTGCCGGCGCTTCGTGCTGCACTTGTCGACGACAGCGTACAGGCGGTAGGGCGAC
GCGTCGGTGGCGAGCCACTGCTCGACGGTGAAGAGCGTCTGCGCGCAGCCCAGGTGGGGCCCCGTGACCGTGACCTCGAGGTAGTTGCAGTACCAGCCGT
GGTGCGCGCCGGTGCCGTCGGAGGTGAGGTTCATGGCGCAGGGGCGCTGGCTCATGCAGGGCCCCCGGCCGCTGAAGATGTCCAGGTTGCCGCGCTCGTA
GTAGTCGTGGCCGGCGCCCATGAGCCCGCCCCACGCCGCCAGGTCCCGGATCCGGATCCCCGTGCCGTCCGCGCCCAGCAGCGTGACGCCGATCGTCGAG
TCCGTGCCGCCCTTCCAGATGGACCCCGTCCGCACGTACACCGTGTACACGCACTGCTTACCGCGGCGGCAAAGAAGGCGAGGAGAAGGCAGG